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Updated: Aug 3, 2025

ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data
Published on: January 16, 2019
Translating desktop success to the web in the cytoscape project
Dexter Pratt1, Rudolf T Pillich1, John H Morris2
1Division of Genetics, Department of Medicine, University of California San Diego, La Jolla, CA, United States.
None:
Cytoscape is an open-source bioinformatics environment for the analysis, integration, visualization, and query of biological networks. In this perspective piece, we describe our project to bring the Cytoscape desktop application to the web while explaining our strategy in ways relevant to others in the bioinformatics community. We examine opportunities and challenges in developing bioinformatics software that spans both the desktop and web, and we describe our ongoing efforts to build a Cytoscape web application, highlighting the principles that guide our development.
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