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An Electronic Health Record Intervention to Limit Viral Testing of Cerebrospinal Fluid
Kyle A Lyman1, Evan Madill1, Prateek Thatikunta1
1Department of Neurology & Neurological Sciences, Stanford University School of Medicine, Stanford, CA, USA.
Abstract:
Meningitis and encephalitis are neurologic emergencies that require immediate management and current guidelines recommend empiric treatment with broad-spectrum antimicrobials. Cerebrospinal fluid (CSF) testing algorithms are heterogeneous and largely institution-specific, reflecting a lack of consensus on how to effectively identify CSF pathogens while conserving resources and avoiding false positives. Moreover, many lumbar punctures (LPs) performed in the inpatient setting are done for noninfectious workups, such as evaluation for leptomeningeal metastasis. As such, tailoring CSF testing to clinical context has been a focus of multiple prior reports and several healthcare systems have focused on efforts to limit low-yield diagnostic testing when a positive result is unlikely. To curb ordering viral PCRs when pre-test probability is low, some peer institutions have implemented pleocytosis criteria for virus-specific polymerase chain reaction (PCR) tests from CSF. In this report, we retrospectively analyzed the diagnostic testing of CSF from patients who had an LP while admitted to a single, large academic medical center and found that many cases of Herpes Simplex Virus (HSV) meningoencephalitis were diagnosed by non-neurologists. The rate of positive virus-specific PCR tests was very low, and tests were frequently ordered in duplicate with a multiplexed meningitis/encephalitis PCR panel (M/E panel, BioFire, Salt Lake City, UT). We designed and implemented a systems-level intervention to promote a revised stepwise testing algorithm that minimizes unnecessary tests. This intervention led to a significant reduction in the number of low-yield virus-specific PCR tests ordered without implementing a policy of cancelling virus-specific PCRs.
Insights
Implementing a stepwise cerebrospinal fluid (CSF) testing algorithm significantly reduced low-yield viral polymerase chain reaction (PCR) tests for meningitis and encephalitis. This optimized diagnostic approach improved resource utilization without compromising patient care.
Area of Science:
- Neurology
- Infectious Diseases
- Clinical Diagnostics
Background:
- Meningitis and encephalitis are critical neurologic emergencies necessitating prompt treatment.
- Current guidelines recommend broad-spectrum antimicrobials, but cerebrospinal fluid (CSF) testing algorithms lack standardization, leading to resource inefficiencies and potential false positives.
- Lumbar punctures (LPs) are often performed for noninfectious indications, complicating diagnostic strategies.
Purpose of the Study:
- To analyze the diagnostic utility of CSF testing in a large academic medical center.
- To evaluate the frequency of low-yield viral polymerase chain reaction (PCR) tests, particularly for Herpes Simplex Virus (HSV) meningoencephalitis.
- To design and implement a systems-level intervention to optimize CSF testing algorithms and reduce unnecessary diagnostic procedures.
Main Methods:
- Retrospective analysis of CSF diagnostic testing in hospitalized patients undergoing LP.
- Assessment of viral PCR test ordering patterns, including duplicate testing and multiplex panels.
- Implementation of a revised, stepwise CSF testing algorithm aimed at minimizing low-yield tests.
Main Results:
- A low rate of positive virus-specific PCR tests was observed, with many cases of HSV meningoencephalitis diagnosed by non-neurologists.
- Viral PCR tests were frequently ordered redundantly alongside multiplex meningitis/encephalitis (M/E) panels.
- The implemented intervention significantly decreased the number of low-yield virus-specific PCR tests ordered.
Conclusions:
- A stepwise CSF testing algorithm can effectively reduce unnecessary viral PCR testing.
- Optimizing diagnostic pathways enhances resource conservation in managing suspected meningitis and encephalitis.
- Tailoring CSF testing to clinical context is crucial for efficient and accurate diagnosis of neurologic emergencies.
Related Concept Videos
Cerebrospinal Fluid
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CSF is produced mainly in the choroid plexus, a network of capillaries and ependymal cells located within the ventricular system of the brain.
Viral Meningitis
Arboviral Encephalitis
Respiratory Syncytial Virus Disease
Inhibitors Of Virion Release

