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Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation
Fengling Hu1, Andrew A Chen1, Hannah Horng1
1Penn Statistics in Imaging and Visualization Endeavor (PennSIVE), Department of Biostatistics, Epidemiology, and Informatics, Perelman School of Medicine, University of Pennsylvania, 423 Guardian Dr, Philadelphia, PA 19104, United States.
Image harmonization methods address batch effects in medical imaging like MRI and CT scans. This review categorizes current techniques and proposes a framework for evaluating their effectiveness in preserving biological information.
Area of Science:
- Neuroimaging
- Medical Image Analysis
- Data Science
Background:
- Medical imaging data (MRI, CT) from diverse sources exhibit batch effects, confounding downstream analyses.
- These technical variations can bias results and limit the generalizability and reproducibility of neuroimaging studies.
- Existing image harmonization methods aim to mitigate these batch effects.
Purpose of the Study:
- To review and categorize current statistical and deep learning-based image harmonization methods.
- To describe evaluation metrics for assessing harmonization techniques.
- To propose a standardized framework for evaluating new harmonization methods.
Main Methods:
- Systematic review of statistical and deep learning image harmonization approaches.
- Analysis of current metrics for evaluating harmonization effectiveness.
- Development of a standardized evaluation framework.
Main Results:
- Categorization of existing image harmonization methods.
- Identification of key evaluation metrics for harmonization.
- A proposed framework for standardized method evaluation.
Conclusions:
- Effective image harmonization is crucial for reliable neuroimaging research.
- A standardized framework is needed to rigorously evaluate and compare harmonization methods.
- Recommendations are provided for users and methodologists to advance the field.

