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Related Concept Videos

Drug Discovery: Overview01:26

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Drug discovery is a multifaceted process involving extensive screening, testing, and optimization of lead compounds to identify potential new drugs for therapeutic use. It combines several approaches, including screening large numbers of natural products, chemical modification of known active molecules, identification of new drug targets, and rational design based on biological mechanisms and drug-receptor structure. These approaches are carried out in both academic research laboratories and...
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A Clinical Metaproteomics Workflow Implemented within Galaxy Bioinformatics Platform to Analyze Host-Microbiome Interactions Underlying Human Disease
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Galaxy for open-source computational drug discovery solutions.

Anamika Singh Gaur1,2,3, Selvaraman Nagamani1,3, Lipsa Priyadarsinee1,3

  • 1Advanced Computation and Data Sciences Division, CSIR -North East Institute of Science and Technology, Jorhat, India.

Expert Opinion on Drug Discovery
|April 24, 2023
PubMed
Summary
This summary is machine-generated.

The Galaxy platform is suitable for developing disease-specific web portals like the Molecular Property Diagnostic Suite (MPDS). This approach facilitates the free sharing of computational methods for computer-aided drug design (CADD) within the scientific community.

Keywords:
Data-drivenMPDSdrug discoverygalaxyintegrated methodsopen-sourceworkflow management system

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Area of Science:

  • Computational biology
  • Bioinformatics
  • Drug discovery

Background:

  • Academia and industry face distinct drug discovery challenges: knowledge generation versus product development.
  • Galaxy is an open-source, web-based workbench for analyzing large datasets, integrating analysis and visualization tools.
  • Workflows can be customized within the Galaxy platform based on specific methodologies.

Purpose of the Study:

  • To evaluate the Galaxy platform's suitability for creating a disease-specific web portal.
  • To introduce the Molecular Property Diagnostic Suite (MPDS) as a novel disease-specific web portal concept.

Main Methods:

  • Appraisal of the Galaxy platform's capabilities for web portal development.
  • Integration of various analysis and visualization tools within a single framework.

Main Results:

  • Galaxy is well-suited for community-based software development due to efficient integration of diverse scripts, tools, and codes.
  • MPDS proposes a new disease-specific web portal model for sharing computational methods.

Conclusions:

  • The Galaxy platform is a viable environment for developing specialized bioinformatics tools like MPDS.
  • MPDS aims to foster collaboration and free sharing of computational methods in computer-aided drug design (CADD).