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ALKBH5 Drives Immune Suppression Via Targeting AXIN2 to Promote Colorectal Cancer and Is a Target for Boosting
Jianning Zhai1, Huarong Chen2, Chi Chun Wong1
1Institute of Digestive Disease and Department of Medicine and Therapeutics, State Key Laboratory of Digestive Disease, Li Ka Shing Institute of Health Sciences, Chinese University of Hong Kong-Shenzhen Research Institute, The Chinese University of Hong Kong, Hong Kong.
Background & Aims:
Immune checkpoint blockade therapy benefits only a small subset of patients with colorectal cancer (CRC), and identification of CRC-intrinsic events modulating immune checkpoint blockade efficacy is an unmet need. We found that AlkB homolog 5 (ALKBH5), an RNA N6-methyladenosine eraser, drives immunosuppression and is a molecular target to boost immune checkpoint blockade therapy in CRC.
Methods:
Clinical significance of ALKBH5 was evaluated in human samples (n = 205). Function of ALKBH5 was investigated in allografts, CD34+ humanized mice, and Alkbh5 knockin mice. Immunity change was determined by means of flow cytometry, immunofluorescence, and functional investigation. Methylated RNA immunoprecipitation sequencing and RNA sequencing were used to identify ALKBH5 targets. Vesicle-like nanoparticle-encapsulated ALKBH5-small interfering RNA was constructed for targeting ALKBH5 in vivo.
Results:
High ALKBH5 expression predicts poor prognosis in CRC. ALKBH5 induced myeloid-derived suppressor cell accumulation but reduced natural killer cells and cytotoxic CD8+ T cells to induce colorectal tumorigenesis in allografts, CD34+ humanized mice, and intestine-specific Alkbh5 knockin mice. Mechanistically, AXIN2, a Wnt suppressor, was identified as a target of ALKBH5. ALKBH5 binds and demethylates AXIN2 messenger RNA, which caused its dissociation from N6-methyladenosine reader IGF2BP1 and degradation, resulting in hyperactivated Wnt/β-catenin. Subsequently, Wnt/β-catenin targets, including Dickkopf-related protein 1 (DKK1) were induced by ALKBH5. ALKBH5-induced DKK1 recruited myeloid-derived suppressor cells to drive immunosuppression in CRC, and this effect was abolished by anti-DKK1 in vitro and in vivo. Finally, vesicle-like nanoparticle-encapsulated ALKBH5-small interfering RNA, or anti-DKK1 potentiated anti-PD1 treatment in suppressing CRC growth by enhancing antitumor immunity.
Conclusions:
This study identified an ALKBH5-N6-methyladenosine-AXIN2-Wnt-DKK1 axis in CRC, which drives immune suppression to facilitate tumorigenesis. Targeting of ALKBH5 is a promising strategy for sensitizing CRC to immunotherapy.
Insights
Targeting ALKBH5, an RNA eraser, can enhance immune checkpoint blockade therapy in colorectal cancer (CRC). This study reveals an ALKBH5-driven axis that promotes tumor growth and immune suppression in CRC.
Area of Science:
- Oncology
- Immunology
- Epigenetics
Background:
- Immune checkpoint blockade (ICB) therapy benefits limited colorectal cancer (CRC) patients.
- Identifying CRC-intrinsic factors that modulate ICB efficacy is crucial.
- AlkB homolog 5 (ALKBH5) is an RNA N6-methyladenosine eraser implicated in CRC progression.
Purpose of the Study:
- To investigate the role of ALKBH5 in CRC and its potential as a target to improve ICB therapy.
- To elucidate the molecular mechanisms by which ALKBH5 influences the tumor immune microenvironment in CRC.
Main Methods:
- Clinical significance of ALKBH5 assessed in 205 human CRC samples.
- Functional studies conducted in allografts, CD34+ humanized mice, and intestine-specific Alkbh5 knockin mice.
- RNA sequencing and methylated RNA immunoprecipitation sequencing used to identify ALKBH5 targets; nanoparticle-encapsulated ALKBH5-small interfering RNA developed for in vivo targeting.
Main Results:
- High ALKBH5 expression correlates with poor CRC prognosis and promotes tumorigenesis by increasing myeloid-derived suppressor cells and decreasing natural killer and CD8+ T cells.
- ALKBH5 targets AXIN2 mRNA, leading to its demethylation, dissociation from IGF2BP1, and degradation, resulting in Wnt/β-catenin hyperactivation.
- ALKBH5 induces Dickkopf-related protein 1 (DKK1), which recruits myeloid-derived suppressor cells, driving immunosuppression; this effect is reversed by anti-DKK1.
- ALKBH5 inhibition or anti-DKK1 therapy potentiates anti-PD1 efficacy in suppressing CRC growth by enhancing antitumor immunity.
Conclusions:
- An ALKBH5-N6-methyladenosine-AXIN2-Wnt-DKK1 axis drives immune suppression and tumorigenesis in CRC.
- Targeting ALKBH5 represents a promising strategy to sensitize CRC to immunotherapy.
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