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A self-supervised learning-based approach to clustering multivariate time-series data with missing values
Hamid Ghaderi1, Brandon Foreman2, Amin Nayebi1
1Department of Systems and Industrial Engineering, University of Arizona, Tucson, AZ, USA.
This study introduces SLAC-Time, a novel self-supervised learning method for clustering time-series data with missing values. It effectively identifies distinct Traumatic Brain Injury (TBI) patient phenotypes, aiding targeted treatment strategies.
Area of Science:
- Machine Learning
- Biomedical Informatics
- Data Science
Background:
- Clustering multivariate time-series data is crucial for uncovering patterns in complex datasets.
- Existing methods struggle with missing values, requiring imputation that can introduce errors and computational overhead.
- Self-supervised learning offers a promising avenue for robust time-series analysis.
Purpose of the Study:
- To develop a self-supervised learning approach for clustering multivariate time-series data with inherent missing values.
- To address the limitations of imputation-based methods in time-series clustering.
- To identify distinct patient phenotypes in Traumatic Brain Injury (TBI) using time-series clinical data.
Main Methods:
- Introduced SLAC-Time, a Transformer-based clustering method utilizing time-series forecasting as a proxy task.
- Employed a joint learning approach for neural network parameters and cluster assignments.
- Iteratively clustered representations using K-means and updated parameters with pseudo-labels.
Main Results:
- SLAC-Time demonstrated superior performance over baseline K-means clustering based on multiple evaluation metrics.
- Successfully identified three distinct Traumatic Brain Injury (TBI) patient phenotypes.
- Phenotypes showed significant differences in clinical variables, outcomes (GOSE, ICU stay), and mortality.
Conclusions:
- SLAC-Time effectively clusters multivariate time-series data with missing values, outperforming traditional methods.
- The identified TBI phenotypes offer valuable insights for personalized medicine.
- These findings can guide the development of targeted clinical trials and therapeutic interventions for TBI patients.
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