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Updated: Jul 28, 2025

Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example
Published on: March 11, 2020
Nanopore Sequencing Techniques: A Comparison of the MinKNOW and the Alignator Sequencers
Sebastian Oeck1, Alicia I Tüns2, Alexander Schramm2
1Department of Medical Oncology, West German Cancer Center, University Hospital Essen, University of Duisburg-Essen, Essen, Germany. sebastian.oeck@uk-essen.de.
Abstract:
Whole genome and transcriptome analyses represent powerful tools. Despite improvements in sequencing methodology, whole transcriptome analyses are still tedious, especially for methodologies producing long reads. Here, we compare the sequence data analysis software MinKNOW and our tool Alignator. Furthermore, we provide a walk-through from RNA isolation and preparation for MinION sequencing as well as insides in the processing of sequencing data using both tools.
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