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We introduce the exponential family variational Kalman filter (eVKF), an online Bayesian method for real-time neural trajectory inference and dynamical system learning. This method offers competitive performance for computational neuroscience applications.

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Area of Science:

  • Computational Neuroscience
  • Machine Learning

Background:

  • Latent variable models are crucial for understanding neural computation.
  • Offline algorithms for neural trajectory extraction are well-developed.
  • Real-time alternatives for immediate feedback and enhanced experimental design are less explored.

Approach:

  • Introduced the exponential family variational Kalman filter (eVKF), an online recursive Bayesian method.
  • eVKF infers latent trajectories and learns the underlying dynamical system simultaneously.
  • Utilizes the constant base measure exponential family for latent state stochasticity and works with arbitrary likelihoods.

Key Points:

  • Derived a closed-form variational analogue to the Kalman filter's predict step.
  • Achieved a provably tighter bound on the Evidence Lower Bound (ELBO) compared to other online variational methods.
  • Validated eVKF on both synthetic and real-world neural data.

Conclusions:

  • eVKF demonstrates competitive performance in inferring latent neural dynamics.
  • The method provides a powerful tool for real-time analysis in computational neuroscience.
  • Facilitates immediate feedback and improved experimental design in neural recording studies.