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Predictive Quantitative Read-Across Structure-Property Relationship Modeling of the Retention Time (Log
Shilpayan Ghosh1, Mainak Chatterjee1, Kunal Roy1
1Drug Theoretics and Cheminformatics Laboratory, Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700032, India.
This study developed a quantitative read-across structure-property relationship (q-RASPR) model to predict pesticide retention times in HPLC analysis. The model accurately predicts retention time and aids in identifying ecotoxicity potential.
Area of Science:
- Environmental Chemistry
- Computational Chemistry
- Toxicology
Background:
- Retention time in HPLC correlates with lipophilicity, a key factor in ecotoxicity.
- Quantitative Structure-Property Relationship (QSPR) models have limitations in external predictivity.
- Novel modeling approaches are needed for accurate prediction of environmental chemical properties.
Purpose of the Study:
- To develop and validate a quantitative read-across structure-property relationship (q-RASPR) model for predicting pesticide retention times (log tR) using HPLC data.
- To assess the model's external predictivity and interpretability for environmental risk assessment.
- To explore the utility of q-RASPR as a cost-effective alternative to experimental methods for predicting ecotoxicity potential.
Main Methods:
- Utilized a dataset of 823 environmentally significant pesticide residues.
- Employed 0D-2D descriptors and read-across-derived similarity descriptors for model generation.
- Developed a Partial Least Squares (PLS) model and validated it using OECD-recommended internal and external metrics.
Main Results:
- The developed q-RASPR model demonstrated excellent performance: R² = 0.82, Q²LOO = 0.81, Q²F1 = 0.84.
- The model significantly outperformed previously reported QSPR models in external predictivity.
- Lipophilicity was identified as the primary descriptor influencing retention time, with other factors like multiple bonds and graph density also playing significant roles.
Conclusions:
- The q-RASPR model is a robust, externally predictive, and interpretable tool for retention time prediction.
- This methodology offers a cost-effective and efficient alternative to experimental approaches for predicting ecotoxicity potential.
- q-RASPR shows strong potential for transferability and application in environmental risk assessment and chemical safety evaluations.
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