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Avoid missing pKas: High-throughput workflow using solution pH-metric in tandem with UV-metric measurements
Linhong Yang1, Suzanne Skolnik1
1Novartis Institutes for BioMedical Research, Cambridge, MA 02139, USA.
A novel automated workflow combines solution pH-metric and UV-metric measurements for efficient pKa determination. This method accelerates drug discovery by overcoming challenges like low solubility and missing pKas.
Area of Science:
- Analytical Chemistry
- Medicinal Chemistry
Background:
- Accurate pKa determination is crucial for drug discovery and understanding Structure-Activity Relationships (SAR).
- Traditional methods can be time-consuming and may fail to identify all relevant pKa values, especially for compounds with poor UV absorbance or solubility.
Purpose of the Study:
- To develop and validate a high-throughput automated workflow for pKa determination.
- To integrate potentiometric (solution pH-metric) and UV-metric measurements for comprehensive pKa profiling.
- To address limitations of existing methods in drug discovery settings, such as low solubility and overlapping pKas.
Main Methods:
- Development of a high-throughput automated pKa workflow using potentiometry with 10 mM DMSO stock solutions.
- Evaluation of two potentiometric approaches: neat DMSO stock and DMSO removal, with varying sample amounts and cosolvent systems.
- Validation of the automated workflow against traditional potentiometric measurements.
- Tandem execution of high-throughput solution pH-metric and UV-metric experiments.
Main Results:
- The automated workflow demonstrated efficiency and accuracy comparable to traditional methods.
- The combined pH-metric and UV-metric approach successfully identified pKa values that might be missed by UV-metric analysis alone.
- The workflow effectively handles challenges including low solubility and overlapping pKas.
Conclusions:
- The integrated high-throughput workflow offers significant sample and time savings for measuring numerous compounds in drug discovery.
- This combined approach enhances the ability to determine pKas, aiding in preliminary SAR understanding and overcoming common analytical hurdles.
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