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Updated: Jul 25, 2025

Utilizing 3D Printing Technology to Merge MRI with Histology: A Protocol for Brain Sectioning
Published on: December 6, 2016
Mixed methodology in human brain research: integrating MRI and histology
Anneke Alkemade1, Rosa Großmann2, Pierre-Louis Bazin2,3,4
1Integrative Model-Based Cognitive Neuroscience Unit, Department of Psychology, University of Amsterdam, Amsterdam, The Netherlands. jmalkemade@gmail.com.
Abstract:
Postmortem magnetic resonance imaging (MRI) can provide a bridge between histological observations and the in vivo anatomy of the human brain. Approaches aimed at the co-registration of data derived from the two techniques are gaining interest. Optimal integration of the two research fields requires detailed knowledge of the tissue property requirements for individual research techniques, as well as a detailed understanding of the consequences of tissue fixation steps on the imaging quality outcomes for both MRI and histology. Here, we provide an overview of existing studies that bridge between state-of-the-art imaging modalities, and discuss the background knowledge incorporated into the design, execution and interpretation of postmortem studies. A subset of the discussed challenges transfer to animal studies as well. This insight can contribute to furthering our understanding of the normal and diseased human brain, and to facilitate discussions between researchers from the individual disciplines.
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