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Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology.

Yunhao Bai1,2, Bokai Zhu1,3, John-Paul Oliveria4,5

  • 1Department of Pathology, Stanford University, Stanford, CA, USA.

Nature Communications
|July 7, 2023
PubMed
Summary
This summary is machine-generated.

Researchers developed a new method called ExPRESSO that allows scientists to physically enlarge tissue samples while keeping them stable in a vacuum. This technique enables the simultaneous detection of over 40 different proteins in a single sample using advanced mass spectrometry imaging platforms. By preserving tissue structure during the expansion process, this approach provides high-resolution views of complex biological environments, such as the blood-brain barrier, in archival clinical samples.

Keywords:
Expansion MicroscopyMass Spectrometry ImagingSpatial BiologyMultiplexed Protein Staining

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Area of Science:

  • Advanced bioimaging and Expansion Microscopy techniques
  • Spatial histopathology and multiplexed protein analysis

Background:

Biological systems exhibit complex structural arrangements across diverse spatial dimensions that remain difficult to fully characterize. Existing high-plex imaging modalities often struggle to achieve the necessary resolution for visualizing intricate subcellular molecular components. Physical enlargement of specimens through hydrogel-based protocols offers a potential solution for enhancing spatial detail. However, integrating these expanded samples with current multiplexed imaging hardware presents significant technical hurdles. No prior work had resolved how to maintain structural integrity during the vacuum conditions required for mass spectrometry analysis. That uncertainty drove the development of specialized chemical frameworks for tissue stabilization. This gap motivated the creation of protocols that bridge the divide between physical expansion and high-throughput protein detection. Researchers sought to overcome these limitations to enable more comprehensive insights into tissue biology.

Purpose Of The Study:

The researchers aimed to develop a framework that combines physical tissue expansion with high-plex imaging technologies. This study addresses the limitation of current methods in resolving subcellular biomolecular features across multiple scales. The authors sought to create a platform that allows for the simultaneous detection of numerous proteins in expanded samples. They specifically focused on overcoming the challenges of integrating hydrogel-based expansion with mass spectrometry imaging. The team intended to provide a solution that maintains tissue structure under the vacuum conditions required by these platforms. They aimed to validate the utility of their approach using archival clinical biospecimens. The motivation for this work was to enable more comprehensive biological insights with minimal modifications to existing laboratory workflows. The investigators designed their protocol to facilitate high-resolution spatial histopathology in a variety of tissue types.

Main Methods:

The researchers designed a framework that incorporates hydrogel-based expansion with vacuum-compatible stabilization techniques. Their approach involves staining tissue sections with multiple protein markers before subjecting them to physical enlargement. They then process these samples to remove water content while ensuring the lateral dimensions remain fixed. The team utilized Multiplexed Ion Beam Imaging and Imaging Mass Cytometry to evaluate the performance of their prepared specimens. They applied this workflow to archival clinical samples derived from human lymphoid and brain sources. The investigators compared the structural resolution achieved by their method against standard imaging limitations. They focused on maintaining the integrity of delicate biological features during the transition to vacuum-based detection systems. The study emphasizes the minimal adjustments required for existing laboratory instrumentation and standard operating procedures.

Main Results:

The researchers successfully demonstrated the detection of over 40 markers within expanded tissue samples using their novel framework. This high-plex capability allowed for the visualization of intricate tissue architecture at the subcellular level. The application of the method to brain tissue specifically resolved the structural details of the blood-brain barrier. The authors observed that their hydrogel-based approach retained lateral expansion even after the removal of water. This stability proved effective for imaging on both Multiplexed Ion Beam Imaging and Imaging Mass Cytometry platforms. The results indicate that the protocol is compatible with archival clinical specimens. The team achieved these outcomes with minimal changes to standard instrumentation protocols. The data confirm that the framework bridges the gap between physical enlargement and mass spectrometry analysis.

Conclusions:

The authors propose that their framework enables the integration of physical tissue enlargement with mass spectrometry imaging platforms. This synthesis suggests that researchers can now analyze archival clinical specimens with high-plex capabilities without requiring extensive hardware modifications. The findings imply that maintaining lateral expansion under vacuum conditions is achievable for complex tissue architectures. The study demonstrates that resolving subcellular features in lymphoid and brain samples is feasible using this approach. The researchers indicate that their method provides a versatile platform for broad applications in spatial histopathology. The evidence supports the utility of this technique for visualizing delicate structures like the blood-brain barrier. The authors conclude that their protocol minimizes the need for specialized instrumentation changes in existing laboratory workflows. This work offers a pathway for enhanced multiscaled biological insights through improved compatibility between hydrogel-expanded samples and imaging technologies.

The researchers propose that ExPRESSO utilizes a vacuum-stable hydrogel framework to maintain lateral tissue expansion. This mechanism allows for the successful integration of physically enlarged biospecimens with mass spectrometry platforms, enabling the detection of over 40 distinct protein markers within a single sample.

The authors utilize Expand and comPRESS hydrOgels (ExPRESSO) as the core component. This specialized material facilitates the removal of water from the sample while preserving the structural integrity required for high-resolution imaging on platforms like Multiplexed Ion Beam Imaging and Imaging Mass Cytometry.

The researchers state that vacuum stability is necessary to prevent structural collapse during mass spectrometry analysis. This condition allows the expanded tissue to remain compatible with ion beam and mass cytometry instrumentation, which typically operate under high-vacuum environments to ensure accurate detection of molecular markers.

The authors employ archival human lymphoid and brain tissues to validate the platform. These biological samples serve as the data type for demonstrating the ability to resolve complex architectures, such as the blood-brain barrier, at the subcellular level after the expansion process.

The researchers measure the detection capabilities of the platform by identifying more than 40 markers. This measurement confirms the effectiveness of the method in providing high-plex protein staining alongside physical expansion, surpassing the limitations of traditional imaging techniques that lack such integrative capacity.

The authors propose that their platform extends the analysis compatibility of hydrogel-expanded biospecimens to mass spectrometry. They claim this advancement requires minimal modifications to existing laboratory protocols and instrumentation, thereby facilitating broader adoption of high-resolution spatial histopathology in clinical research settings.