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Updated: Jul 21, 2025

Analyzing and Building Nucleic Acid Structures with 3DNA
Published on: April 26, 2013
Analysis of the crystal structure of a parallel three-stranded coiled coil
Matteo de March1,2, Neal Hickey1, Silvano Geremia1
1Department of Chemical and Pharmaceutical Sciences, University of Trieste, Trieste, Italy.
None:
Here, we present the crystal structure of the synthetic peptide KE1, which contains four K-coil heptads separated in the middle by the QFLMLMF heptad. The structure determination reveals the presence of a canonical parallel three stranded coiled coil. The geometric characteristics of this structure are compared with other coiled coils with the same topology. Furthermore, for this topology, the analysis of the propensity of the single amino acid to occupy a specific position in the heptad sequence is reported. A number of viral proteins use specialized coiled coil tail needles to inject their genetic material into the host cells. The simplicity and regularity of the coiled coil arrangement made it an attractive system for de novo design of key molecules in drug delivery systems, vaccines, and therapeutics.
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