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Updated: Jul 18, 2025

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Systematic Approach Revealed SERPING1 Splicing-Affecting Variants to be Highly Represented in the Czech National HAE
Hana Grombirikova1,2, Viktor Bily1,2, Premysl Soucek1,2
1Centre for Cardiovascular Surgery and Transplantation, Brno, Czech Republic.
Insights
Genetic screening of hereditary angioedema due to C1 inhibitor deficiency (C1-INH-HAE) in Czech patients identified 56 SERPING1 variants, including 5 novel ones. This study enhances understanding of C1-INH-HAE genetics and genotype-phenotype correlations.
Area of Science:
- Genetics
- Immunology
- Rare Diseases
Background:
- Hereditary angioedema due to C1 inhibitor deficiency (C1-INH-HAE) is a rare, life-threatening condition causing recurrent swelling.
- Accurate genetic diagnosis is crucial for effective management of C1-INH-HAE.
Purpose of the Study:
- To systematically screen for SERPING1 gene defects in a Czech cohort of C1-INH-HAE patients.
- To identify novel causal variants and elucidate genotype-phenotype correlations in C1-INH-HAE.
Main Methods:
- Comprehensive SERPING1 gene sequencing, including UTR and deep intronic regions.
- In silico prediction tools and mRNA-based functional assays (minigene, RT-PCR) for variant analysis.
- Systematic genetic screening of 207 Czech patients from 85 families with C1-INH-HAE.
Main Results:
- Identified 56 different SERPING1 variants, including 5 potentially novel causal variants, in 84 out of 85 families.
- Observed a higher proportion of splicing variants in the Czech cohort compared to other populations.
- Found significant genotype-phenotype correlations, including delayed HAE onset with missense variants and attack frequency/severity linked to specific SERPING1 variants.
Conclusions:
- The study provides a comprehensive genetic landscape of C1-INH-HAE in the Czech population.
- Advanced screening strategies and functional analyses are vital for improving C1-INH-HAE diagnosis and management.
- Understanding genotype-phenotype correlations aids in predicting disease course and severity.
Abstract:
Hereditary angioedema due to C1 inhibitor deficiency (C1-INH-HAE) is a rare and life-threatening condition characterized by recurrent localized edema. We conducted a systematic screening of SERPING1 defects in a cohort of 207 Czech patients from 85 families with C1-INH-HAE. Our workflow involved a combined strategy of sequencing extended to UTR and deep intronic regions, advanced in silico prediction tools, and mRNA-based functional assays. This approach allowed us to detect a causal variant in all families except one and to identify a total of 56 different variants, including 5 novel variants that are likely to be causal. We further investigated the functional impact of two splicing variants, namely c.550 + 3A > C and c.686-7C > G using minigene assays and RT-PCR mRNA analysis. Notably, our cohort showed a considerably higher proportion of detected splicing variants compared to other central European populations and the LOVD database. Moreover, our findings revealed a significant association between HAE type 1 missense variants and a delayed HAE onset when compared to null variants. We also observed a significant correlation between the presence of the SERPING1 variant c.-21 T > C in the trans position to causal variants and the frequency of attacks per year, disease onset, as well as Clinical severity score. Overall, our study provides new insights into the genetic landscape of C1-INH-HAE in the Czech population, including the identification of novel variants and a better understanding of genotype-phenotype correlations. Our findings also highlight the importance of comprehensive screening strategies and functional analyses in improving the C1-INH-HAE diagnosis and management.
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