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Updated: Jul 18, 2025

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Determining Membrane Protein Topology Using Fluorescence Protease Protection FPP
Published on: April 20, 2015
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Revealing KRas4b topology on the membrane surface
Shweta Shree1, Mark A McLean1, Andrew G Stephen2
1Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, United States.
Biochemical and Biophysical Research Communications
|August 26, 2023
Summary
KRas4b, a key regulator in cell signaling and cancer, adopts an extended conformation on cell membranes. Anionic lipids influence this conformation, offering new therapeutic targets for Ras-driven cancers.
Area of Science:
- Molecular Biology
- Biophysics
- Cancer Research
Background:
- KRas4b is a small GTPase crucial for signal transduction, acting as a molecular switch.
- Oncogenic KRas4b mutations drive ~85% of Ras-driven cancers, making its membrane-bound state a therapeutic target.
- The precise conformation and membrane interaction of KRas4b remain debated, with conflicting models suggesting membrane-proximal or distal orientations.
Purpose of the Study:
- To investigate the membrane-bound conformation of KRas4b using advanced biophysical techniques.
- To elucidate the role of anionic lipids in modulating KRas4b's topology and interactions.
- To provide insights for developing targeted therapies against KRas4b-driven oncogenic signaling.
Main Methods:
- Utilized Förster Resonance Energy Transfer (FRET) measurements to determine KRas4b conformation.
- Employed a Nanodisc-based assay with fully post-translationally modified KRas4b.
- Studied KRas4b interactions with model membrane bilayers containing anionic lipids.
Main Results:
- Demonstrated an extended conformation of KRas4b relative to the membrane surface.
- Quantified FRET donor-acceptor distances, revealing conformational dynamics.
- Showed that negatively charged membrane surfaces weakly promote closer association of KRas4b with the membrane.
Conclusions:
- KRas4b adopts a predominantly extended conformation on the membrane surface.
- Anionic lipids play a significant role in determining the dynamic conformations and membrane association of KRas4b.
- Findings offer a deeper understanding of KRas4b's membrane topology, crucial for targeting oncogenic signaling pathways.
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