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Simultaneous DNA-RNA Extraction from Coastal Sediments and Quantification of 16S rRNA Genes and Transcripts by Real-time PCR
Published on: June 11, 2016
Contaminant biomonitoring augmented with a qPCR array indicates hepatic mRNA gene expression effects in
Mason D King1, Geoffrey Su1, Doug Crump2
1Simon Fraser University, Department of Biological Sciences, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
Persistent environmental contaminants in seabird eggs can affect embryo development. This study links contaminant levels in rhinoceros auklet embryos to specific gene expression changes, offering new biomarkers for wildlife biomonitoring.
Area of Science:
- Environmental Toxicology
- Wildlife Biology
- Molecular Ecology
Background:
- Birds bioaccumulate persistent contaminants, posing risks to embryos via maternal transfer.
- Assessing contaminant effects in wildlife is challenging due to limited sensitive biomarkers.
- Tissue residue concentrations alone have uncertainties in predicting adverse effects.
Purpose of the Study:
- To investigate the relationship between embryonic contaminant burdens and gene expression in liver tissue.
- To identify potential mRNA expression biomarkers for contaminant exposure in seabird embryos.
- To evaluate the utility of egg collection for biomonitoring contaminant impacts.
Main Methods:
- Collected rhinoceros auklet eggs and incubated them under controlled conditions.
- Analyzed whole embryo tissue for residues of mercury, pesticides, PFAS, PCBs, and HFRs.
- Extracted RNA from embryonic liver tissue for qPCR array analysis of gene expression.
Main Results:
- Found correlations between embryonic total mercury and specific genes, including sepp1.
- Identified a correlation between the biotransformation gene cyp1a4 and perfluoroalkyl carboxylic acid PFHpA.
- Demonstrated the link between chemical residues and in ovo mRNA gene expression in hepatic tissue.
Conclusions:
- Egg contaminant burdens are associated with specific molecular responses in developing seabird embryos.
- mRNA expression analysis in embryonic liver tissue can serve as a sensitive biomarker for contaminant effects.
- This approach enhances contaminant biomonitoring programs using samples from free-living populations.
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