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Updated: Jul 17, 2025

Genome-wide Analysis of Histone Modifications Distribution using the Chromatin Immunoprecipitation Sequencing Method in Magnaporthe oryzae
Published on: June 2, 2021
The KdmB-EcoA-RpdA-SntB (KERS) chromatin regulatory complex controls development, secondary metabolism and
Betim Karahoda1, Brandon T Pfannenstiel2, Özlem Sarikaya-Bayram1
1Biology Department, Maynooth University, Maynooth, Co. Kildare, Ireland.
Abstract:
The filamentous fungus Aspergillus flavus is a plant and human pathogen predominantly found in the soil as spores or sclerotia and is capable of producing various secondary metabolites (SM) such as the carcinogenic mycotoxin aflatoxin. Recently, we have discovered a novel nuclear chromatin binding complex (KERS) that contains the JARID1-type histone demethylase KdmB, a putative cohesion acetyl transferase EcoA, a class I type histone deacetylase RpdA and the PHD ring finger reader protein SntB in the model filamentous fungus Aspergillus nidulans. Here, we show the presence of the KERS complex in A. flavus by immunoprecipitation-coupled mass spectrometry and constructed kdmBΔ and rpdAΔ strains to study their roles in fungal development, SM production and histone post-translational modifications (HPTMs). We found that KdmB and RpdA couple the regulation of SM gene clusters with fungal light-responses and HPTMs. KdmB and RpdA have opposing roles in light-induced asexual conidiation, while both factors are positive regulators of sclerotia development through the nsdC and nsdD pathway. KdmB and RpdA are essential for the productions of aflatoxin (similar to findings for SntB) as well as cyclopiazonic acid, ditryptophenaline and leporin B through controlling the respective SM biosynthetic gene clusters. We further show that both KdmB and RpdA regulate H3K4me3 and H3K9me3 levels, while RpdA also acts on H3K14ac levels in nuclear extracts. Therefore, the chromatin modifiers KdmB and RpdA of the KERS complex are key regulators for fungal development and SM metabolism in A. flavus.
Insights
The KERS complex, including KdmB and RpdA, regulates Aspergillus flavus development and mycotoxin production by controlling gene clusters and histone modifications. This chromatin complex is crucial for fungal growth and secondary metabolite metabolism.
Area of Science:
- Mycology
- Molecular Biology
- Biochemistry
Background:
- * Aspergillus flavus is a soil-borne pathogen producing harmful mycotoxins like aflatoxin.
- * A novel nuclear chromatin binding complex (KERS) was identified in Aspergillus nidulans, comprising KdmB, EcoA, RpdA, and SntB.
- * Understanding chromatin regulation in A. flavus is key to controlling its pathogenic and metabolic activities.
Purpose of the Study:
- * To confirm the presence of the KERS complex in Aspergillus flavus.
- * To investigate the roles of KdmB and RpdA in fungal development, secondary metabolite (SM) production, and histone modifications.
- * To elucidate the regulatory mechanisms linking chromatin structure to fungal pathogenicity.
Main Methods:
- * Immunoprecipitation-coupled mass spectrometry to identify the KERS complex in A. flavus.
- * Construction and analysis of kdmBΔ and rpdAΔ mutant strains.
- * Assessment of fungal development (conidiation, sclerotia formation), SM production, and histone post-translational modifications (HPTMs).
Main Results:
- * The KERS complex, including KdmB and RpdA, is present in A. flavus.
- * KdmB and RpdA oppositely regulate light-induced conidiation but positively regulate sclerotia development.
- * KdmB and RpdA are essential for producing aflatoxin, cyclopiazonic acid, ditryptophenaline, and leporin B by controlling SM gene clusters.
- * KdmB and RpdA influence H3K4me3 and H3K9me3 levels, while RpdA also affects H3K14ac.
Conclusions:
- * The KERS complex components KdmB and RpdA are critical regulators of fungal development and secondary metabolism in Aspergillus flavus.
- * These chromatin modifiers link fungal light responses, development, and mycotoxin biosynthesis.
- * Targeting the KERS complex offers potential strategies for controlling A. flavus pathogenicity and mycotoxin contamination.
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