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SCP Viz - A universal graphical user interface for single protein analysis in single cell proteomics datasets.
Ahmed Warshanna1, Benjamin C Orsburn1
1The Department of Pharmacology and Molecular Sciences; The Johns Hopkins University School of Medicine, Baltimore, MD, USA, 21205.
Biorxiv : the Preprint Server for Biology
|September 11, 2023
Summary
Single cell proteomics (SCP) analysis is challenging due to protein abundance assessment. SCP Viz is a new software tool that simplifies visualizing and analyzing single-cell proteomic data from various sources.
Area of Science:
- Proteomics
- Bioinformatics
- Computational Biology
Background:
- Single cell proteomics (SCP) is crucial for biological insights but faces challenges in analyzing protein abundance.
- Existing methods lack universal solutions for handling diverse SCP output data.
Conclusions:
- SCP Viz addresses the challenge of protein abundance assessment in single cell proteomics.
- The software enables robust visualization and analysis of proteomic heterogeneity.
- SCP Viz is a valuable, publicly available tool for the scientific community.
