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Fungi of quarantine concern for China I: Dothideomycetes
P Zhao1, P W Crous2,3,4, L W Hou1,5
1State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.
Abstract:
The current list of Chinese quarantine pests includes 130 fungal species. However, recent changes in the taxonomy of fungi following the one fungus = one name initiative and the implementation of DNA phylogeny in taxonomic revisions, resulted in many changes of these species names, necessitating an update of the current list. In addition, many quarantine fungi lack modern morphological descriptions and authentic DNA sequences, posing significant challenges for the development of diagnostic protocols. The aim of the present study was to review the taxonomy and names of the 33 Chinese quarantine fungi in Dothideomycetes, and provide reliable DNA barcodes to facilitate rapid identification. Of these, 23 names were updated according to the single name nomenclature system, including one new combination, namely Cophinforma tumefaciens comb. nov. (syn. Sphaeropsis tumefaciens). On the basis of phylogenetic analyses and morphological comparisons, a new genus Xenosphaeropsis is introduced to accommodate the monotypic species Xenosphaeropsis pyriputrescens comb. nov. (syn. Sphaeropsis pyriputrescens), the causal agent of a post-harvest disease of pears. Furthermore, four lectotypes (Ascochyta petroselini, Mycosphaerella ligulicola, Physalospora laricina, Sphaeria lingam), three epitypes (Ascochyta petroselini, Phoma lycopersici, Sphaeria lingam), and two neotypes (Ascochyta pinodella, Deuterophoma tracheiphila) are designated to stabilise the use of these names. A further four reference strains are introduced for Cophinforma tumefaciens, Helminthosporium solani, Mycocentrospora acerina, and Septoria linicola. In addition, to assist future studies on these important pathogens, we sequenced and assembled whole genomes for 17 species, including Alternaria triticina, Boeremia foveata, B. lycopersici, Cladosporium cucumerinum, Didymella glomerata, Didymella pinodella, Diplodia mutila, Helminthosporium solani, Mycocentrospora acerina, Neofusicoccum laricinum, Parastagonospora pseudonodorum, Plenodomus libanotidis, Plenodomus lingam, Plenodomus tracheiphilus, Septoria petroselini, Stagonosporopsis chrysanthemi, and Xenosphaeropsis pyriputrescens. Citation: Zhao P, Crous PW, Hou LW, et al. 2021. Fungi of quarantine concern for China I: Dothideomycetes. Persoonia 47: 45-105. https://doi.org/10.3767/persoonia.2021.47.02.
Insights
This study updates the taxonomy of 33 Chinese quarantine fungi in Dothideomycetes, introducing a new genus and providing DNA barcodes for accurate identification of these important plant pathogens.
Area of Science:
- Mycology
- Plant Pathology
- Taxonomy
Background:
- The list of Chinese quarantine fungi requires updating due to recent taxonomic changes and the need for reliable diagnostic tools.
- Many quarantine fungi lack modern descriptions and DNA sequences, hindering accurate identification and control.
Purpose of the Study:
- To review and update the taxonomy and nomenclature of 33 Chinese quarantine fungi within the Dothideomycetes class.
- To provide reliable DNA barcodes and genomic data for rapid and accurate identification of these fungal pathogens.
Main Methods:
- Phylogenetic analyses and morphological comparisons were employed to revise fungal taxonomy.
- DNA barcoding and whole-genome sequencing were performed for key fungal species.
- Lectotypes, epitypes, and neotypes were designated to stabilize nomenclature.
Main Results:
- Updated nomenclature for 23 quarantine fungal species according to the single name system.
- Introduction of a new genus, Xenosphaeropsis, and a new combination, Cophinforma tumefaciens.
- Designation of multiple type specimens and reference strains, alongside sequencing of 17 whole fungal genomes.
Conclusions:
- The study provides a revised taxonomic framework for Chinese quarantine fungi in Dothideomycetes.
- Updated nomenclature and DNA resources facilitate accurate identification and management of significant plant pathogens.
- Genomic data will support future research on fungal disease diagnostics and control strategies.
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