Compound Scaling Encoder-Decoder (CoSED) Network for Diabetic Retinopathy Related Bio-marker Detection

Biomedical image segmentation plays an important role in Diabetic Retinopathy (DR)-related biomarker detection. DR is an ocular disease that affects the retina in people with diabetes and could lead to visual impairment if management measures are not taken in a timely manner. In DR screening programs, the presence and severity of DR are identified and classified based on various microvascular lesions detected by qualified ophthalmic screeners. Such a detection process is time-consuming and error-prone, given the small size of the microvascular lesions and the volume of images, especially with the increasing prevalence of diabetes. Automated image processing using deep learning methods is recognized as a promising approach to support diabetic retinopathy screening. In this paper, we propose a novel compound scaling encoder-decoder network architecture to improve the accuracy and running efficiency of microvascular lesion segmentation. In the encoder phase, we develop a lightweight encoder to speed up the training process, where the encoder network is scaled up in depth, width, and resolution dimensions. In the decoder phase, an attention mechanism is introduced to yield higher accuracy. Specifically, we employ Concurrent Spatial and Channel Squeeze and Channel Excitation (scSE) blocks to fully utilise both spatial and channel-wise information. Additionally, a compound loss function is incorporated with transfer learning to handle the problem of imbalanced data and further improve performance. To assess performance, our method is evaluated on two large-scale lesion segmentation datasets: DDR and FGADR datasets. Experimental results demonstrate the superiority of our method compared to other competent methods. Our codes are available at https://github.com/DeweiYi/CoSED-Net.