Evaluation of self-amplifying mRNA platform for protein expression and genetic stability: Implication for mRNA

Swarda Deo1, Kaushik Desai1, Aishwarya Patare1

  • 1Gennova Biopharmaceuticals Ltd. ITBT Park, Hinjawadi Phase 2 Road, Hinjawadi Rajiv Gandhi Infotech Park, Hinjawadi, Pune, Maharashtra, 411057, India.

Insights

Self-amplifying mRNA (SAM) platforms show sustained antigenic protein expression without genomic integration or mutations. This research supports the potential of alphavirus-based SAM technology for future applications.

Area of Science:

  • Biotechnology
  • Molecular Biology
  • Vaccinology

Background:

  • The widespread use of messenger RNA (mRNA) vaccines has raised questions regarding the long-term expression, safety, and potential for genomic integration of mRNA vaccine technologies.
  • Concerns exist about the stability and potential unintended effects of mRNA platforms in vaccine development.

Purpose of the Study:

  • To evaluate the duration of antigenic protein expression from self-amplifying mRNA (SAM) constructs (mRNA-614 and mRNA-S1LC).
  • To investigate the potential for genomic integration and mutations in SAM-based mRNA platforms.
  • To explore the structural and functional aspects of non-structural proteins (nsPs) within the SAM system.

Main Methods:

  • Utilized Expi-293F™, HEK-293T, and ARPE-19 cell lines for mRNA expression studies.
  • Assessed protein expression using sandwich-ELISA, flow cytometry (FACS), luciferase activity assays, and Western blotting.
  • Confirmed mRNA integrity through sequencing and assessed genomic integration via PCR analysis.
  • Generated in silico 3D structures of nsPs and expressed these proteins using the T7 system.

Main Results:

  • Sustained antigenic protein expression was observed from the mRNA-614 and mRNA-S1LC SAM constructs.
  • Sequencing confirmed that the transcribed mRNA remained un-mutated throughout the study.
  • No evidence of reverse transcribed mRNA integration into the host cell genome was detected up to 7 days post-transfection.
  • High-quality 3D structures of nsPs were successfully generated and their genes cloned and expressed.

Conclusions:

  • The alphavirus-based SAM platform demonstrates stable and long-lasting antigenic protein expression.
  • The absence of genomic integration and mutations supports the safety profile of this SAM platform.
  • These findings highlight the significant potential of alphavirus-based SAM technology as a future vaccine modality.

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