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Remote Laboratory Management: Respiratory Virus Diagnostics
Published on: April 6, 2019
A framework for future national pediatric pandemic respiratory disease severity triage: The HHS pediatric COVID-19
Timothy Bergquist1, Marie Wax2, Tellen D Bennett3
1Sage Bionetworks, Seattle, WA, USA.
Insights
A federal challenge developed computational models to identify children at risk for severe COVID-19 outcomes. This initiative aims to improve resource allocation during public health emergencies.
Area of Science:
- Computational epidemiology
- Pediatric infectious diseases
- Public health informatics
Background:
- COVID-19 remains a significant burden on the pediatric population due to persistent incidence and incomplete vaccination.
- Identifying at-risk pediatric patients for severe COVID-19 is crucial for effective healthcare resource allocation during surges.
- A lack of validated, nationwide computational tools hinders proactive risk identification in children.
Purpose of the Study:
- To develop computational models for identifying pediatric patients at risk of severe COVID-19 outcomes.
- To address two key clinical questions: risk for hospitalization in outpatients and risk for mechanical ventilation or cardiovascular interventions in hospitalized children.
- To leverage real-world data from the National COVID Cohort Collaborative (N3C).
Main Methods:
- A multi-agency, coordinated computational challenge was launched by HHS ASPR BARDA.
- Fifty-five computational models were evaluated across two distinct tasks.
- The National COVID Cohort Collaborative (N3C) provided the real-world data for model development and evaluation.
Main Results:
- Two winning models and three honorable mentions were selected from the evaluated submissions.
- The challenge successfully demonstrated the potential of computational modeling in addressing critical public health questions.
- This initiative represents a novel federal approach to leveraging data and competition for pandemic response.
Conclusions:
- The computational challenge provides a successful framework for government, research, and data repositories to collaborate on solutions during public health crises.
- This approach can accelerate the development and validation of tools for identifying at-risk pediatric populations.
- Future efforts can build upon this model to enhance preparedness and response to infectious disease threats.
Introduction:
With persistent incidence, incomplete vaccination rates, confounding respiratory illnesses, and few therapeutic interventions available, COVID-19 continues to be a burden on the pediatric population. During a surge, it is difficult for hospitals to direct limited healthcare resources effectively. While the overwhelming majority of pediatric infections are mild, there have been life-threatening exceptions that illuminated the need to proactively identify pediatric patients at risk of severe COVID-19 and other respiratory infectious diseases. However, a nationwide capability for developing validated computational tools to identify pediatric patients at risk using real-world data does not exist.
Methods:
HHS ASPR BARDA sought, through the power of competition in a challenge, to create computational models to address two clinically important questions using the National COVID Cohort Collaborative: (1) Of pediatric patients who test positive for COVID-19 in an outpatient setting, who are at risk for hospitalization? (2) Of pediatric patients who test positive for COVID-19 and are hospitalized, who are at risk for needing mechanical ventilation or cardiovascular interventions?
Results:
This challenge was the first, multi-agency, coordinated computational challenge carried out by the federal government as a response to a public health emergency. Fifty-five computational models were evaluated across both tasks and two winners and three honorable mentions were selected.
Conclusion:
This challenge serves as a framework for how the government, research communities, and large data repositories can be brought together to source solutions when resources are strapped during a pandemic.
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