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Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
Published on: October 11, 2018
Preterm preeclampsia screening using biomarkers: combining phenotypic classifiers into robust prediction models
Grégoire Thomas1, Argyro Syngelaki2, Karam Hamed2
1SQU4RE, Lokeren, Belgium (Dr Thomas); Metabolomic Diagnostics, Cork, Ireland (Drs Thomas, Panigassi, and Tuytten).
Insights
New metabolite biomarkers significantly improve early prediction of preterm preeclampsia when combined with existing markers. Stratifying by maternal characteristics like BMI enhances detection rates, offering a more accurate screening tool for this critical pregnancy complication.
Area of Science:
- Obstetrics and Gynecology
- Biomarker Discovery
- Maternal-Fetal Medicine
Background:
- Preeclampsia screening is vital in antenatal care, with current tests identifying ~75% of preterm cases using placental growth factor, mean arterial pressure, and uterine artery pulsatility index.
- Further improvements necessitate additional biomarkers, as recent findings link specific metabolites to preterm preeclampsia, with prediction varying by maternal body mass index (BMI).
Purpose of the Study:
- To investigate if metabolite biomarkers enhance preterm preeclampsia prediction across three screening scenarios based on biomarker availability.
- To assess the impact of combining metabolites with placental growth factor (PlGF), mean arterial pressure (MAP), and uterine artery pulsatility index (UtAPI).
Main Methods:
- An observational case-control study at King's College Hospital, London, involving 1635 controls and 106 preterm preeclampsia cases.
- Liquid chromatography-mass spectrometry quantified 50 metabolites in plasma, with prediction models developed using combinatorial modeling and bagging, stratified by BMI and race.
- Performance evaluated using area under the receiver operating characteristic curve (AUC) and detection rate at 10% false-positive rate.
Main Results:
- New prediction models incorporating metabolites showed significantly higher AUC and detection rates compared to reference models across all three scenarios.
- The PlGF+MAP+metabolites model achieved a 15% increase in detection rate (0.58 vs. 0.43), significantly improving prediction in Black (14%) and White (19%) patients, and normal-weight (18.5–25 BMI) and obese (≥30 BMI) groups.
- Metabolites were selected across models, with 21 contributing to at least two models, demonstrating their consistent utility.
Conclusions:
- Metabolite biomarkers, when combined with established markers (PlGF, MAP, UtAPI), significantly improve early preterm preeclampsia prediction.
- Maternal phenotyping (BMI, race) is crucial for optimizing prediction, highlighting its role in improving screening for obstetrical syndromes like preeclampsia.
Background:
Preeclampsia screening is a critical component of antenatal care worldwide. Currently, the most developed screening test for preeclampsia at 11 to 13 weeks' gestation integrates maternal demographic characteristics and medical history with 3 biomarkers-serum placental growth factor, mean arterial pressure, and uterine artery pulsatility index-to identify approximately 75% of women who develop preterm preeclampsia with delivery before 37 weeks of gestation. It is generally accepted that further improvements to preeclampsia screening require the use of additional biomarkers. We recently reported that the levels of specific metabolites and metabolite ratios are associated with preterm preeclampsia. Notably, for several of these markers, preterm preeclampsia prediction varied according to maternal body mass index class. These findings motivated us to study whether patient classification allowed for combining metabolites with the current biomarkers more effectively to improve prediction of preterm preeclampsia.
Objective:
This study aimed to investigate whether metabolite biomarkers can improve biomarker-based preterm preeclampsia prediction in 3 screening resource scenarios according to the availability of: (1) placental growth factor, (2) placental growth factor+mean arterial pressure, and (3) placental growth factor+mean arterial pressure+uterine artery pulsatility index.
Study Design:
This was an observational case-control study, drawn from a large prospective screening study at 11 to 13 weeks' gestation on the prediction of pregnancy complications, conducted at King's College Hospital, London, United Kingdom. Maternal blood samples were also collected for subsequent research studies. We used liquid chromatography-mass spectrometry to quantify levels of 50 metabolites previously associated with pregnancy complications in plasma samples from singleton pregnancies. Biomarker data, normalized using multiples of medians, on 1635 control and 106 preterm preeclampsia pregnancies were available for model development. Modeling was performed using a methodology that generated a prediction model for preterm preeclampsia in 4 consecutive steps: (1) z-normalization of predictors, (2) combinatorial modeling of so-called (weak) classifiers in the unstratified patient set and in discrete patient strata based on body mass index and/or race, (3) selection of classifiers, and (4) aggregation of the selected classifiers (ie, bagging) into the final prediction model. The prediction performance of models was evaluated using the area under the receiver operating characteristic curve, and detection rate at 10% false-positive rate.
Results:
First, the predictor development methodology itself was evaluated. The patient set was split into a training set (2/3) and a test set (1/3) for predictor model development and internal validation. A prediction model was developed for each of the 3 different predictor panels, that is, placental growth factor+metabolites, placental growth factor+mean arterial pressure+metabolites, and placental growth factor+mean arterial pressure+uterine artery pulsatility index+metabolites. For all 3 models, the area under the receiver operating characteristic curve in the test set did not differ significantly from that of the training set. Next, a prediction model was developed using the complete data set for the 3 predictor panels. Among the 50 metabolites available for modeling, 26 were selected across the 3 prediction models; 21 contributed to at least 2 out of the 3 prediction models developed. Each time, area under the receiver operating characteristic curve and detection rate were significantly higher with the new prediction model than with the reference model. Markedly, the estimated detection rate with the placental growth factor+mean arterial pressure+metabolites prediction model in all patients was 0.58 (95% confidence interval, 0.49-0.70), a 15% increase (P<.001) over the detection rate of 0.43 (95% confidence interval, 0.33-0.55) estimated for the reference placental growth factor+mean arterial pressure. The same prediction model significantly improved detection in Black (14%) and White (19%) patients, and in the normal-weight group (18.5≤body mass index<25) and the obese group (body mass index≥30), with respectively 19% and 20% more cases detected, but not in the overweight group, when compared with the reference model. Similar improvement patterns in detection rates were found in the other 2 scenarios, but with smaller improvement amplitudes.
Conclusion:
Metabolite biomarkers can be combined with the established biomarkers of placental growth factor, mean arterial pressure, and uterine artery pulsatility index to improve the biomarker component of early-pregnancy preterm preeclampsia prediction tests. Classification of the pregnant women according to the maternal characteristics of body mass index and/or race proved instrumental in achieving improved prediction. This suggests that maternal phenotyping can have a role in improving the prediction of obstetrical syndromes such as preeclampsia.
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