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Published on: May 24, 2020
The role of APOBEC3-induced mutations in the differential evolution of monkeypox virus
Xiangting Li1, Sara Habibipour2, Tom Chou1,3
1Department of Computational Medicine, UCLA, Los Angeles, CA, United States.
Abstract:
Recent studies show that newly sampled monkeypox virus (MPXV) genomes exhibit mutations consistent with Apolipoprotein B mRNA Editing Catalytic Polypeptide-like3 (APOBEC3)-mediated editing compared to MPXV genomes collected earlier. It is unclear whether these single-nucleotide polymorphisms (SNPs) result from APOBEC3-induced editing or are a consequence of genetic drift within one or more MPXV animal reservoirs. We develop a simple method based on a generalization of the General-Time-Reversible model to show that the observed SNPs are likely the result of APOBEC3-induced editing. The statistical features allow us to extract lineage information and estimate evolutionary events.
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