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Updated: Jul 12, 2025

Engineering Antiviral Agents via Surface Plasmon Resonance
Published on: June 14, 2022
SARS-COV-2 protein NSP9 promotes cytokine production by targeting TBK1
Yihua Zhang1, Bowen Xin1, Yinan Liu1
1Department of Immunology, School of Basic Medical Sciences, Shanghai Institute of Infectious Disease and Biosecurity & Shanghai Public Health Clinical Center, Fudan University, Shanghai, China.
Abstract:
SARS-COV-2 infection-induced excessive or uncontrolled cytokine storm may cause injury of host tissue or even death. However, the mechanism by which SARS-COV-2 causes the cytokine storm is unknown. Here, we demonstrated that SARS-COV-2 protein NSP9 promoted cytokine production by interacting with and activating TANK-binding kinase-1 (TBK1). With an rVSV-NSP9 virus infection model, we discovered that an NSP9-induced cytokine storm exacerbated tissue damage and death in mice. Mechanistically, NSP9 promoted the K63-linked ubiquitination and phosphorylation of TBK1, which induced the activation and translocation of IRF3, thereby increasing downstream cytokine production. Moreover, the E3 ubiquitin ligase Midline 1 (MID1) facilitated the K48-linked ubiquitination and degradation of NSP9, whereas virus infection inhibited the interaction between MID1 and NSP9, thereby inhibiting NSP9 degradation. Additionally, we identified Lys59 of NSP9 as a critical ubiquitin site involved in the degradation. These findings elucidate a previously unknown mechanism by which a SARS-COV-2 protein promotes cytokine storm and identifies a novel target for COVID-19 treatment.
Insights
SARS-CoV-2 protein NSP9 triggers cytokine storms by activating TBK1, leading to tissue damage and death. Inhibiting NSP9 degradation offers a potential COVID-19 treatment strategy.
Area of Science:
- Virology
- Immunology
- Molecular Biology
Background:
- Cytokine storms from SARS-CoV-2 infection can cause severe tissue damage and mortality.
- The precise molecular mechanisms by which SARS-CoV-2 induces cytokine storms remain incompletely understood.
Purpose of the Study:
- To elucidate the mechanism of SARS-CoV-2-induced cytokine storm.
- To identify potential therapeutic targets for COVID-19.
Main Methods:
- Investigated the interaction between SARS-CoV-2 protein NSP9 and TANK-binding kinase-1 (TBK1).
- Utilized an rVSV-NSP9 virus infection model in mice.
- Analyzed protein ubiquitination, phosphorylation, and translocation pathways.
Main Results:
- SARS-CoV-2 NSP9 directly interacts with and activates TBK1, promoting cytokine production.
- NSP9 induces K63-linked ubiquitination and phosphorylation of TBK1, leading to IRF3 activation and cytokine release.
- The E3 ligase MID1 targets NSP9 for degradation, but SARS-CoV-2 infection disrupts this interaction, stabilizing NSP9.
Conclusions:
- SARS-CoV-2 protein NSP9 is a key driver of cytokine storms via TBK1 activation.
- Disrupting NSP9-TBK1 interaction or enhancing NSP9 degradation are potential therapeutic strategies for COVID-19.
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