DnaA protein binding to the plasmid origin region can substitute for primosome assembly during replication of pBR322 in vitro
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Updated: May 5, 2026

Recombineering Homologous Recombination Constructs in Drosophila
Published on: July 13, 2013
Abstract:
We analyzed the significance of DnaA protein binding to the origin region of pBR322. Replication of pBR322 in vitro was stimulated by DnaA protein. Moreover, the primosomal component protein i was no longer essential for replication after addition of DnaA protein, whereas, among others, proteins DnaB and DnaG were still required. Complete replication products were synthesized under these conditions. We constructed pBR322 deletion derivatives missing the primosome assembly sites. Efficient replication of these deletion plasmids was dependent on the presence of DnaA protein and its binding site, but independent of protein i activity. We conclude that DnaA protein binding to the pBR322 origin region substitutes for primosome assembly by directing DnaB, DnaC, and DnaG proteins to the origin. We term this process DnaA-directed pre-replisome formation.
Insights
The DnaA protein binds to the pBR322 origin, stimulating DNA replication. This binding replaces the need for protein i, directing other essential proteins to form the pre-replisome.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- The plasmid pBR322 relies on specific protein interactions for replication initiation.
- The DnaA protein and primosomal components are crucial for bacterial DNA replication.
Purpose of the Study:
- To investigate the role of DnaA protein binding in pBR322 replication.
- To elucidate the mechanism by which DnaA influences primosome assembly and function.
Main Methods:
- In vitro replication assays using pBR322 and its derivatives.
- Construction and analysis of pBR322 deletion mutants lacking primosome assembly sites.
- Biochemical characterization of protein-DNA interactions and replication requirements.
Main Results:
- DnaA protein significantly stimulates pBR322 replication in vitro.
- DnaA protein presence renders primosomal protein i non-essential for replication.
- Replication of pBR322 deletion derivatives requires DnaA protein and its binding site, independent of protein i.
- Essential replication proteins DnaB and DnaG remain necessary for DnaA-mediated replication.
Conclusions:
- DnaA protein binding to the pBR322 origin acts as a substitute for canonical primosome assembly.
- DnaA directs the assembly of key replication proteins (DnaB, DnaC, DnaG) at the origin.
- This process, termed DnaA-directed pre-replisome formation, is a novel mechanism for replication initiation.
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