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Updated: Jul 10, 2025

Identification of Transcription Factor Regulators using Medium-Throughput Screening of Arrayed Libraries and a Dual-Luciferase-Based Reporter
Published on: March 27, 2020
Modulation of Krüppel-like factors (KLFs) interaction with their binding partners in cancers through acetylation and
Kanupriya Jha1, Amit Kumar1, Kartik Bhatnagar1
1Department of Biotechnology, School of Engineering and Applied Sciences, Bennett University, Plot Nos. 8-11, Tech Zone 2, Greater Noida, Uttar Pradesh 201310, India.
Abstract:
Post-translational modifications (PTMs) of transcription factors regulate transcriptional activity and play a key role in essentially all biological processes and generate indispensable insight towards biological function including activity state, subcellular localization, protein solubility, protein folding, substrate trafficking, and protein-protein interactions. Amino acids modified chemically via PTMs, function as molecular switches and affect the protein function and characterization and increase the proteome complexity. Krüppel-like transcription factors (KLFs) control essential cellular processes including proliferation, differentiation, migration, programmed cell death and various cancer-relevant processes. We investigated the interactions of KLF group-2 members with their binding partners to assess the role of acetylation and phosphorylation in KLFs on their binding affinity. It was observed that acetylation and phosphorylation at different positions in KLFs have a variable effect on binding with specific partners. KLF2-EP300, KLF4-SP1, KLF6-ATF3, KLF6-JUN, and KLF7-JUN show stabilization upon acetylation or phosphorylation at variable positions. On the other hand, KLF4-CBP, KLF4-EP300, KLF5-CBP, KLF5-WWP1, KLF6-SP1, and KLF7-ATF3 show stabilization or destabilization due to acetylation or phosphorylation at variable positions in KLFs. This provides a molecular explanation of the experimentally observed dual role of KLF group-2 members as a suppressor or activator of cancers in a PTM-dependent manner.
Insights
Post-translational modifications (PTMs) like acetylation and phosphorylation act as molecular switches for Krüppel-like transcription factors (KLFs). These modifications influence KLF interactions, explaining their dual role in cancer suppression or activation.
Area of Science:
- Molecular Biology
- Epigenetics
- Cancer Biology
Background:
- Post-translational modifications (PTMs) are crucial for regulating protein function and increasing proteome complexity.
- Krüppel-like transcription factors (KLFs) are key regulators of cellular processes, including proliferation, differentiation, and cancer development.
- The dual role of KLF group-2 members as cancer suppressors or activators is often observed but lacks molecular explanation.
Purpose of the Study:
- To investigate the impact of acetylation and phosphorylation on the binding affinity of KLF group-2 members with their partners.
- To elucidate the molecular mechanisms underlying the context-dependent functions of KLFs in cancer.
Main Methods:
- The study focused on analyzing the interactions between KLF group-2 members and their known binding partners.
- Specific PTMs (acetylation and phosphorylation) at various positions within KLFs were assessed for their effects on binding interactions.
Main Results:
- Acetylation and phosphorylation at different sites on KLFs exhibited variable effects on their binding affinities with specific partners.
- Some KLF-partner interactions, such as KLF2-EP300 and KLF6-JUN, were stabilized by these modifications.
- Other interactions, including KLF4-CBP and KLF5-WWP1, showed either stabilization or destabilization depending on the specific PTM and its position.
Conclusions:
- PTMs significantly modulate KLF group-2 member interactions with their binding partners.
- These PTM-dependent changes in binding affinity provide a molecular basis for the observed dual role of KLFs in cancer.
- Understanding these modifications is essential for deciphering KLF functions in both normal biological processes and disease states.
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