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JUMPn: A Streamlined Application for Protein Co-Expression Clustering and Network Analysis in Proteomics
Published on: October 19, 2021
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Proteomic Evolution from Acute to Post-COVID-19 Conditions.
Yassene Mohammed1,2,3, Karen Tran4, Chris Carlsten5
1Center for Proteomics and Metabolomics, Leiden University Medical Center, Leiden 2333 ZA, The Netherlands.
Journal of Proteome Research
|December 4, 2023
Summary
Post-COVID-19 conditions involve changing protein levels, with lipid pathways increasing and immune responses decreasing. Females exhibit distinct plasma protein profiles compared to males, impacting lung function predictions.
Area of Science:
- Proteomics
- Immunology
- Pulmonology
Background:
- Post-COVID-19 conditions affect many survivors, with females at higher risk.
- Understanding protein level changes is crucial for managing long COVID.
- Differences in protein signatures between sexes may explain varying disease severity.
Purpose of the Study:
- To investigate protein level alterations from acute COVID-19 to post-COVID-19 conditions.
- To identify sex-specific plasma protein signatures.
- To correlate protein levels with pulmonary function metrics like FVC and DLCO.
Main Methods:
- Measured protein concentrations in 74 patients at admission, 3, and 6 months post-diagnosis.
- Utilized multiple reaction monitoring (MRM) with 269 heavy-labeled peptides.
- Assessed pulmonary function using predicted forced vital capacity (FVC) and diffusing capacity for carbon monoxide (DLCO).
Main Results:
- Proteins in six lipid-related pathways increased from admission to 6 months.
- Proteins involved in innate immunity and vasoconstriction decreased over time.
- Eight proteins associated with FVC and five with DLCO showed significant predictive value.
Conclusions:
- Lipid biology appears to drive the progression of post-COVID-19 conditions.
- Decreased innate immunity and vascular regulation pathways are characteristic of the post-COVID-19 state.
- Sex-based differences in protein profiles exist and correlate with pulmonary function deficits.
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