Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Predicting Molecular Geometry02:27

Predicting Molecular Geometry

VSEPR Theory for Determination of Electron Pair Geometries
Crystal Growth: Principles of Crystallization01:25

Crystal Growth: Principles of Crystallization

Crystallization is a phase transformation process in which crystals are precipitated from a supersaturated solution or formed from other sources. During crystallization, atoms or molecules arrange themselves into a well-defined, rigid crystal lattice to minimize energy.
Initiating crystallization involves manipulating the concentration of the solute and the temperature of the solution. Since crystal growth occurs when the ratio of concentration and solubility of the solute in the solvent – the...
Determination of Crystal Structures01:29

Determination of Crystal Structures

In the late 1800s, the revelation that light extended beyond visible wavelengths led to the discovery of X-rays by Wilhelm Roentgen. Recognized as high-energy electromagnetic radiation with short wavelengths, X-rays prompted exploration into their interaction with crystals. Max von Laue proposed in 1912 that the periodic arrangement of atoms, ions, or molecules in crystals would cause them to diffract X-rays, a hypothesis confirmed through experiments with copper sulfate and zinc sulfide...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

MAHLER: Integrating Metadynamics and Inverse Folding to Predict Antibody-Antigen Kinetics.

bioRxiv : the preprint server for biology·2026
Same author

Tuneable structural and environmental factors for stability of rosette nanotubes.

Nanoscale advances·2026
Same author

Comparison of genetic heat tolerance in Japanese Holstein cows estimated by using milk yield, somatic cell score, or milk β-hydroxybutyrate.

Journal of dairy science·2026
Same author

Physical Function Indicators Associated with Reduced Work Productivity and Estimated Economic Loss in Employed Patients with Respiratory Diseases.

Journal of occupational and environmental medicine·2026
Same author

Computing inbreeding coefficients accounting for unknown parents using pedigree-based metafounders.

JDS communications·2026
Same author

Peptide-Functionalized Rosette Nanotubes: Programmable Supramolecular Assembly and Tunable Peptide Surface Organization.

Biomacromolecules·2026
Same journal

Nuclear Gradients from Auxiliary-Field Quantum Monte Carlo and Their Applications in ML-Driven Geometry Optimization and Transition State Search.

Journal of chemical theory and computation·2026
Same journal

Correction to "Cluster-in-Molecule Local Correlation Method with an Accurate Distant Pair Correction for Large Systems".

Journal of chemical theory and computation·2026
Same journal

Machine-Learned Force Fields for Lattice Dynamics at Coupled-Cluster Level Accuracy.

Journal of chemical theory and computation·2026
Same journal

Systematic Molecularity-Dependent Entropy Errors in Continuum/RRHO Solution Thermochemistry: Origin and Correction.

Journal of chemical theory and computation·2026
Same journal

After 100 Years of Quantum Mechanics: Toward a Constructive Observation-Centered Perspective.

Journal of chemical theory and computation·2026
Same journal

Sample-Based Quantum Diagonalization Methods for Modeling the Photochemistry of Diazirine and Diazo Compounds.

Journal of chemical theory and computation·2026
See all related articles

Related Experiment Video

Updated: Jul 1, 2026

Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules
07:11

Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules

Published on: March 22, 2019

6.9K

Accelerated Organic Crystal Structure Prediction with Genetic Algorithms and Machine Learning.

Amit Kadan1, Kevin Ryczko1, Andrew Wildman1

  • 1Good Chemistry Company, 1285 W Pender Street, Vancouver, British Columbia V6E 4B1, Canada.

Journal of Chemical Theory and Computation
|December 7, 2023
PubMed
Summary
This summary is machine-generated.

We developed a new pipeline for organic crystal structure prediction. It uses machine learning to efficiently identify stable crystal structures, achieving an 80% success rate.

More Related Videos

Derivatization of Protein Crystals with I3C using Random Microseed Matrix Screening
14:04

Derivatization of Protein Crystals with I3C using Random Microseed Matrix Screening

Published on: January 16, 2021

4.7K
Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids
08:21

Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids

Published on: April 13, 2022

2.7K

Related Experiment Videos

Last Updated: Jul 1, 2026

Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules
07:11

Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules

Published on: March 22, 2019

6.9K
Derivatization of Protein Crystals with I3C using Random Microseed Matrix Screening
14:04

Derivatization of Protein Crystals with I3C using Random Microseed Matrix Screening

Published on: January 16, 2021

4.7K
Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids
08:21

Curation of Computational Chemical Libraries Demonstrated with Alpha-Amino Acids

Published on: April 13, 2022

2.7K

Area of Science:

  • Computational chemistry
  • Materials science
  • Crystallography

Background:

  • Organic crystal structure prediction (CSP) is crucial for understanding material properties.
  • Accurate CSP requires efficient methods for screening and optimizing crystal candidates.

Purpose of the Study:

  • To present a high-throughput, end-to-end pipeline for organic crystal structure prediction.
  • To leverage neural network potentials for efficient screening and structural relaxation.
  • To assess the performance of different stages of the pipeline.

Main Methods:

  • A two-stage pipeline combining random search and genetic algorithm (GA) optimization.
  • Use of neural network potentials for energy calculations.
  • Validation on 21 molecules from CSP blind tests.

Main Results:

  • Random search alone achieved ≈50% success rate.
  • The full pipeline with GA optimization found matches for ≈80% of targets.
  • The GA approach required 10-100 times smaller initial populations.
  • A pipeline using an ANI model achieved ≈60% success rate.

Conclusions:

  • The developed pipeline significantly improves the efficiency and success rate of organic CSP.
  • Machine learning models can approach the accuracy of ab initio methods while maintaining efficiency.
  • This tool has the potential to accelerate materials discovery.