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Updated: Jul 8, 2025

Incorporating Target Protein Structure Flexibility and Dynamics in Computational Drug Discovery Using Ensemble-Based Docking Analysis
Published on: June 20, 2025
From Byte to Bench to Bedside: Molecular Dynamics Simulations and Drug Discovery
Mayar Ahmed1, Alex M Maldonado1, Jacob D Durrant1
1Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.
Abstract:
Molecular dynamics (MD) simulations and computer-aided drug design (CADD) have advanced substantially over the past two decades, thanks to continuous computer hardware and software improvements. Given these advancements, MD simulations are poised to become even more powerful tools for investigating the dynamic interactions between potential small-molecule drugs and their target proteins, with significant implications for pharmacological research.
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