Reference genes for gene expression profiling in mouse models of Listeria monocytogenes infection

Lethicia Souza Tavares1, Roberta Lane Oliveira-Silva2, Marcelo Tigre Moura3

  • 1Departamento de Biologia, Universidade Federal Rural de Pernambuco, Recife, PE, Brasil.

Biotechniques
|December 19, 2023
PubMed

Insights

Finding the right reference genes (RGs) is crucial for accurate RT-qPCR analysis in mouse models. This study identified specific RGs for macrophages and spleen infected with Listeria monocytogenes, improving gene expression profiling.

Area of Science:

  • Immunology
  • Molecular Biology
  • Genetics

Background:

  • Quantitative real-time PCR (RT-qPCR) is essential for analyzing gene expression.
  • Accurate normalization in RT-qPCR relies on stable reference genes (RGs).
  • Identifying context-specific RGs is critical for reliable results in biological studies.

Purpose of the Study:

  • To identify and validate stable reference genes for RT-qPCR in mouse macrophages (pMØ) and spleen.
  • To evaluate the impact of different RGs on gene expression analysis during Listeria monocytogenes infection.
  • To ensure accurate gene expression profiling in mouse models of infection.

Main Methods:

  • In vitro infection of mouse peritoneal macrophages (pMØ) with L. monocytogenes.
  • In vivo infection of mice with L. monocytogenes, followed by spleen collection.
  • Selection of candidate RGs from various sources (multispecies primers, literature, de novo design).
  • Statistical analysis of RG stability using GeNorm, NormFinder, BestKeeper, Delta-CT, and RefFinder algorithms.

Main Results:

  • For infected pMØ, B2m, H3f3a, and Ppia were identified as the most stable RGs.
  • For infected spleen tissue, Actb, Ubc, and Ppia emerged as the best RGs.
  • The choice of RGs influenced the estimation of cytokine relative expression in both models.
  • Context-specific RGs optimized gene expression profiling in L. monocytogenes-infected mouse models.

Conclusions:

  • Mouse models of L. monocytogenes infection necessitate the use of context-specific reference genes for RT-qPCR.
  • The identified RGs (B2m-H3f3a-Ppia for pMØ; Actb-Ubc-Ppia for spleen) enhance the accuracy of gene expression analysis.
  • This study underscores the importance of rigorous RG selection for reliable molecular profiling in infectious disease research.