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Advancing pathogen genomics in resource-limited settings.

Paul Michael Pronyk1, Ruklanthi de Alwis2, Rebecca Rockett3

  • 1Centre for Outbreak Preparedness, Duke-NUS Medical School, Singapore 169857, Singapore.

Cell Genomics
|December 20, 2023
PubMed
Summary
This summary is machine-generated.

Pathogen genomics aids early detection and characterization for public health. Integrating pathogen genomic surveillance into national plans is crucial for low-resource settings to improve infectious disease control.

Keywords:
emerging infectious diseasesgenomicspathogen genomicsresource-limited settingssurveillancewhole-genome sequencing

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Area of Science:

  • Genomic surveillance
  • Infectious disease epidemiology
  • Public health microbiology

Background:

  • Genomic sequencing is vital for pathogen detection and characterization.
  • Its application is limited in low-resource, high-disease burden settings.
  • Tailored integration strategies are needed for effective infectious disease control.

Purpose of the Study:

  • To propose a framework for embedding pathogen genomics into national surveillance plans.
  • To examine the application of pathogen genomics in resource-limited settings.
  • To assess the value of genomics for public health, clinical decisions, and R&D.

Main Methods:

  • Developing a framework for integrating pathogen genomics.
  • Adopting a public health approach to genomics.
  • Assessing genomics' value proposition for high-priority diseases in resource-limited settings.

Main Results:

  • The proposed framework accommodates varying surveillance and laboratory capacities.
  • Genomic applications are evaluated for their impact on public health decision-making.
  • The study highlights genomics' contribution to developing new diagnostics, therapeutics, and vaccines.

Conclusions:

  • Integrating pathogen genomics into national surveillance is essential for low-resource settings.
  • A tailored public health genomics approach optimizes cost-efficiency and impact.
  • Genomics offers significant value for infectious disease control and R&D in diverse settings.