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Updated: Jul 6, 2025

Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation
Published on: May 20, 2020
A destabilizing Y891D mutation in activated EGFR impairs sensitivity to kinase inhibition
Daniel S Lenchner1,2,3, Zaritza O Petrova4,5, Lisa Hunihan1,2,3
1Department of Internal Medicine, Section of Medical Oncology, Yale School of Medicine, New Haven, CT, USA.
Abstract:
EGFR tyrosine kinase inhibitors (TKIs) have transformed the treatment of EGFR-mutated non-small cell lung carcinoma (NSCLC); however, therapeutic resistance remains a clinical challenge. Acquired secondary EGFR mutations that increase ATP affinity and/or impair inhibitor binding are well-described mediators of resistance. Here we identify a de novo EGFR Y891D secondary alteration in a NSCLC with EGFR L858R. Acquired EGFR Y891D alterations were previously reported in association with resistance to first generation EGFR TKIs. Functional studies in Ba/F3 cells demonstrate reduced TKI sensitivity of EGFR L858R + Y891D, with the greatest reduction observed for first and second generation TKIs. Unlike other EGFR mutations associated with TKI resistance, Y891D does not significantly alter ATP affinity or promote steric hindrance to inhibitor binding. Our data suggest that the Y891D mutation destabilizes EGFR L858R, potentially generating a population of misfolded receptor with preserved signaling capacity but reduced sensitivity to EGFR inhibitors. These findings raise the possibility of protein misfolding as a mechanism of resistance to EGFR inhibition in EGFR-mutated NSCLC.
Insights
A new EGFR Y891D mutation in non-small cell lung cancer (NSCLC) causes resistance to tyrosine kinase inhibitors (TKIs) by destabilizing the receptor, not by altering ATP affinity. This suggests protein misfolding as a novel resistance mechanism.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) are standard treatments for EGFR-mutated non-small cell lung carcinoma (NSCLC).
- Therapeutic resistance to EGFR TKIs, often driven by secondary EGFR mutations, remains a significant clinical obstacle.
Purpose of the Study:
- To investigate a novel de novo EGFR Y891D secondary alteration in NSCLC with an existing EGFR L858R mutation.
- To elucidate the mechanism by which EGFR Y891D contributes to TKI resistance.
Main Methods:
- Identification of EGFR Y891D mutation in a NSCLC patient sample with EGFR L858R.
- Functional studies using Ba/F3 cell lines to assess TKI sensitivity of EGFR L858R + Y891D mutations.
- Analysis of ATP affinity and steric hindrance associated with the Y891D mutation.
Main Results:
- The EGFR L858R + Y891D double mutation confers reduced sensitivity to first and second-generation EGFR TKIs.
- The Y891D mutation does not significantly alter EGFR's ATP binding affinity or cause steric hindrance to TKI binding.
- EGFR Y891D appears to destabilize the EGFR L858R mutation, potentially leading to protein misfolding.
Conclusions:
- EGFR Y891D may confer TKI resistance through a mechanism involving protein destabilization and misfolding, rather than altered ATP affinity or steric hindrance.
- This finding suggests protein misfolding as a potential resistance mechanism to EGFR inhibitors in NSCLC.
- Further research into protein misfolding could reveal new therapeutic strategies for overcoming TKI resistance.
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