Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

56
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
56

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

THe Biom: a platform for visualization and exploration of cancer transcriptomic biomarkers identified by robust feature selection.

Bioinformatics advances·2026
Same author

Guaranteed Visibility in Scatterplots with Tolerance.

IEEE transactions on visualization and computer graphics·2023
Same author

Toward Efficient Deep Learning for Graph Drawing (DL4GD).

IEEE transactions on visualization and computer graphics·2022
Same author

Visualizing Food-Drug Interactions in the Thériaque Database.

Studies in health technology and informatics·2021
Same author

GSAn: an alternative to enrichment analysis for annotating gene sets.

NAR genomics and bioinformatics·2021
Same author

A 750 K Photocharge Linear Full Well in a 3.2 μm HDR Pixel with Complementary Carrier Collection.

Sensors (Basel, Switzerland)·2018
Same journal

MesoSplats: Texture Synthesis with Gaussian Splatting.

IEEE transactions on visualization and computer graphics·2026
Same journal

GLLA: A Unified Force-Directed Graph Layout Framework Supporting Local Adjustments.

IEEE transactions on visualization and computer graphics·2026
Same journal

Multi-Perception Crowd: Learning to combine entity and implicit perception for diverse crowd simulation.

IEEE transactions on visualization and computer graphics·2026
Same journal

Hiding in Plain Sight: Camouflaging Real-world Objects.

IEEE transactions on visualization and computer graphics·2026
Same journal

RTF2Mesh: Restricted Tangent Face Based Mesh Compression With Neural Displacement Fields.

IEEE transactions on visualization and computer graphics·2026
Same journal

Practical Occluder Generation for Mobile Games.

IEEE transactions on visualization and computer graphics·2026
See all related articles

Related Experiment Video

Updated: Jul 6, 2025

Deep Neural Networks for Image-Based Dietary Assessment
13:19

Deep Neural Networks for Image-Based Dietary Assessment

Published on: March 13, 2021

9.2K

Overlap Removal by Stochastic Gradient Descent With(out) Shape Awareness.

Loann Giovannangeli, Frederic Lalanne, Romain Giot

    IEEE Transactions on Visualization and Computer Graphics
    |January 9, 2024
    PubMed
    Summary
    This summary is machine-generated.

    This study introduces improved Overlap Removal (OR) algorithms for 2D data visualizations. The new methods efficiently remove shape overlaps while preserving data topology and readability.

    More Related Videos

    Three-Dimensional Shape Modeling and Analysis of Brain Structures
    05:33

    Three-Dimensional Shape Modeling and Analysis of Brain Structures

    Published on: November 14, 2019

    7.1K
    Measuring the Shape and Size of Activated Sludge Particles Immobilized in Agar with an Open Source Software Pipeline
    09:27

    Measuring the Shape and Size of Activated Sludge Particles Immobilized in Agar with an Open Source Software Pipeline

    Published on: January 30, 2019

    7.1K

    Related Experiment Videos

    Last Updated: Jul 6, 2025

    Deep Neural Networks for Image-Based Dietary Assessment
    13:19

    Deep Neural Networks for Image-Based Dietary Assessment

    Published on: March 13, 2021

    9.2K
    Three-Dimensional Shape Modeling and Analysis of Brain Structures
    05:33

    Three-Dimensional Shape Modeling and Analysis of Brain Structures

    Published on: November 14, 2019

    7.1K
    Measuring the Shape and Size of Activated Sludge Particles Immobilized in Agar with an Open Source Software Pipeline
    09:27

    Measuring the Shape and Size of Activated Sludge Particles Immobilized in Agar with an Open Source Software Pipeline

    Published on: January 30, 2019

    7.1K

    Area of Science:

    • Computer Science
    • Data Visualization
    • Computational Geometry

    Background:

    • Data points in 2D visualizations are often represented as shapes, but inappropriate size/shape choices can cause overlaps, obscuring information.
    • Overlap Removal (OR) algorithms are post-processing solutions to ensure graphical elements accurately represent underlying data.
    • Preserving the original data layout's topology is crucial for effective visualization exploration.

    Purpose of the Study:

    • To extend the FORBID algorithm for Overlap Removal (OR) in 2D visualizations.
    • To develop a shape-aware OR algorithm (SORDID) capable of handling polygonal shapes.
    • To achieve an overlap-free layout balancing compactness and original layout preservation.

    Main Methods:

    • Modeling OR as a joint stress and scaling optimization problem using stochastic gradient descent.
    • Developing SORDID, a shape-aware adaptation of the FORBID algorithm for polygonal data points.
    • Comparing proposed approaches against state-of-the-art algorithms using quality metrics.

    Main Results:

    • The extended FORBID and SORDID algorithms effectively remove overlaps in 2D visualizations.
    • The methods achieve a balance between data compactness and preservation of original layout structures.
    • Evaluations demonstrate superior performance compared to existing state-of-the-art OR algorithms.

    Conclusions:

    • The proposed OR algorithms offer significant improvements in visualization clarity and data exploration.
    • SORDID provides a robust solution for Overlap Removal with arbitrary polygonal shapes.
    • These advancements enhance the reliability and interpretability of complex 2D data visualizations.