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Published on: January 28, 2020
Integration of Biomarker Polygenic Risk Score Improves Prediction of Coronary Heart Disease
Jake Lin1,2, Nina Mars1, Yu Fu1
1Institute for Molecular Medicine Finland, Helsinki Institute of Life Science, University of Helsinki, Helsinki, Finland.
Insights
A combined polygenic risk score (PRS) for coronary heart disease (CHD) biomarkers (BioPRS) and CHD PRS, called CHDBioPRS, improves genetic prediction of CHD. This new score showed a significant impact, especially for early-onset cases.
Area of Science:
- Cardiovascular Genetics
- Biomarker Discovery
- Disease Prediction
Background:
- Established coronary heart disease (CHD) biomarkers include blood pressure, cholesterol, and lipoproteins.
- Polygenic risk scores (PRS) are increasingly used for genetic risk prediction.
- Integrating biomarker information into PRS may enhance CHD prediction accuracy.
Purpose of the Study:
- To develop and evaluate a combined polygenic risk score for CHD that incorporates both genetic predisposition and biomarker information (BioPRS).
- To assess the performance of this novel score (CHDBioPRS) in improving CHD genetic prediction compared to standard CHD PRS.
- To investigate the predictive power of CHDBioPRS across different populations and disease onset times.
Main Methods:
- Development of a biomarker-based polygenic risk score (BioPRS) for CHD.
- Creation of a combined score (CHDBioPRS) integrating BioPRS with a standard CHD PRS.
- Validation of CHDBioPRS using UK Biobank data and testing in the FinnGen cohort.
Main Results:
- The BioPRS demonstrated clear predictive ability for CHD.
- CHDBioPRS significantly improved upon the predictive performance of the standard CHD PRS.
- The largest effect of CHDBioPRS was observed in early-onset CHD cases within the FinnGen cohort, with hazard ratios exceeding 2 per standard deviation.
Conclusions:
- Combining polygenic risk scores for CHD and its associated biomarkers (BioPRS) enhances genetic prediction of the disease.
- CHDBioPRS offers improved risk stratification for coronary heart disease, particularly for individuals with early onset.
- This approach holds promise for refining genetic risk assessment and potentially guiding preventative strategies for CHD.
Abstract:
There are several established biomarkers for coronary heart disease (CHD), including blood pressure, cholesterol, and lipoproteins. It is of high interest to determine how a combined polygenic risk score (PRS) of CHD-associated biomarkers (BioPRS) can further improve genetic prediction of CHD. We developed CHDBioPRS, combining BioPRS with PRS of CHD in the UK Biobank and tested it on FinnGen. We found that BioPRS was clearly predictive of CHD and that CHDBioPRS improved the standard CHD PRS. The largest effect was observed with early onset cases in FinnGen, with HRs above 2 per standard deviation of CHDBioPRS.
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