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Published on: November 5, 2020
Phytochemicals in Pancreatic Cancer Treatment: A Machine Learning Study
Destina Ekingen Genc1, Ozlem Ozbek1, Burcu Oral1
1Department of Chemical Engineering, Bogazici University, Bebek, Istanbul 34342, Turkey.
Abstract:
The discovery of new strategies and novel therapeutic agents is crucial to improving the current treatment methods and increasing the efficacy of cancer therapy. Phytochemicals, naturally occurring bioactive constituents derived from plants, have great potential in preventing and treating various diseases, including cancer. This study reviewed 74 literature studies published between 2006 and 2022 that conducted in vitro cytotoxicity and cell apoptosis analyses of the different concentrations of phytochemicals and their combinations with conventional drugs or supplementary phytochemicals on human pancreatic cell lines. From 34 plant-derived phytochemicals on 20 human pancreatic cancer cell lines, a total of 11 input and 2 output variables have been used to construct the data set that contained 2161 different instances. The machine learning approach has been implemented using random forest for regression, whereas association rule mining has been used to determine the effects of individual phytochemicals. The random forest models developed are generally good, indicating that the phytochemical type, its concentration, and the type of cell line are the most important descriptors for predicting the cell viability. However, for predicting cell apoptosis the primary phytochemical type is the most significant descriptor . Among the studied phytochemicals, catechin and indole-3-carbinol were found to be non-cytotoxic at all concentrations irrespective of the treatment time. On the other hand, berbamine and resveratrol were strongly cytotoxic with cell viabilities of less than 40% at a concentration range between 10 and 100 μM and above 100 μM, respectively, which brings them forward as potential therapeutic agents in the treatment of pancreatic cancer.
Insights
Phytochemicals show promise for pancreatic cancer treatment. Machine learning identified key factors influencing their efficacy, with berbamine and resveratrol demonstrating significant cytotoxicity against cancer cells.
Area of Science:
- Oncology
- Pharmacology
- Computational Biology
Background:
- Novel therapeutic strategies are vital for enhancing pancreatic cancer treatment efficacy.
- Phytochemicals, plant-derived compounds, offer potential in cancer prevention and therapy.
Purpose of the Study:
- To review and analyze in vitro studies on phytochemicals against human pancreatic cancer cell lines.
- To identify key predictors of phytochemical efficacy using machine learning.
Main Methods:
- Systematic literature review of 74 studies (2006-2022) on phytochemical cytotoxicity and apoptosis.
- Machine learning (random forest, association rule mining) applied to a dataset of 2161 instances.
- Analysis of 34 phytochemicals across 20 human pancreatic cancer cell lines.
Main Results:
- Phytochemical type, concentration, and cell line significantly predict cell viability.
- Primary phytochemical type is the most crucial factor for predicting apoptosis.
- Berbamine and resveratrol exhibited strong cytotoxicity, indicating therapeutic potential.
Conclusions:
- Phytochemicals are promising agents for pancreatic cancer therapy.
- Machine learning effectively models phytochemical effects on cancer cells.
- Berbamine and resveratrol warrant further investigation as pancreatic cancer therapeutics.

