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An R-Based Landscape Validation of a Competing Risk Model
Published on: September 16, 2022
One-shot distributed algorithms for addressing heterogeneity in competing risks data across clinical sites
Dazheng Zhang1, Jiayi Tong2, Ronen Stein3
1The Center for Health Analytics and Synthesis of Evidence (CHASE), University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania; Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA. Electronic address: https://twitter.com/DazhengZ.
Insights
We developed a novel algorithm to analyze pediatric Crohn's disease data across multiple hospitals, identifying key risk factors for disease behavior. This approach effectively integrates distributed data while accounting for patient variations.
Area of Science:
- Biostatistics
- Pediatric Gastroenterology
- Health Informatics
Background:
- Analyzing multi-site pediatric data presents challenges due to patient heterogeneity.
- Understanding risk factors for pediatric Crohn's disease (PCD) behaviors like penetrating or stricturing is crucial for effective treatment.
Approach:
- Introduced the ODACoRH algorithm, a one-shot distributed method for competing risks with heterogeneity.
- Developed a surrogate likelihood function combining local and aggregated external data.
- Validated ODACoRH through simulations and replication of the RISK study in a pediatric cohort.
Key Points:
- ODACoRH demonstrated minimal relative bias (-0.2%) compared to meta-analysis (-11.4%).
- Results from ODACoRH align with pooled data, confirming the reliability of federated learning.
- Identified clinical risk factors for PCD consistent with existing literature.
Conclusions:
- The ODACoRH algorithm effectively integrates decentralized data across sites, managing heterogeneity.
- This study highlights significant clinical risk factors for PCD requiring further investigation.
Objective:
To characterize the interplay between multiple medical conditions across sites and account for the heterogeneity in patient population characteristics across sites within a distributed research network, we develop a one-shot algorithm that can efficiently utilize summary-level data from various institutions. By applying our proposed algorithm to a large pediatric cohort across four national Children's hospitals, we replicated a recently published prospective cohort, the RISK study, and quantified the impact of the risk factors associated with the penetrating or stricturing behaviors of pediatric Crohn's disease (PCD).
Methods:
In this study, we introduce the ODACoRH algorithm, a one-shot distributed algorithm designed for the competing risks model with heterogeneity. Our approach considers the variability in baseline hazard functions of multiple endpoints of interest across different sites. To accomplish this, we build a surrogate likelihood function by combining patient-level data from the local site with aggregated data from other external sites. We validated our method through extensive simulation studies and replication of the RISK study to investigate the impact of risk factors on the PCD for adolescents and children from four children's hospitals within the PEDSnet, A National Pediatric Learning Health System. To evaluate our ODACoRH algorithm, we compared results from the ODACoRH algorithms with those from meta-analysis as well as those derived from the pooled data.
Results:
The ODACoRH algorithm had the smallest relative bias to the gold standard method (-0.2%), outperforming the meta-analysis method (-11.4%). In the PCD association study, the estimated subdistribution hazard ratios obtained through the ODACoRH algorithms are identical on par with the results derived from pooled data, which demonstrates the high reliability of our federated learning algorithms. From a clinical standpoint, the identified risk factors for PCD align well with the RISK study published in the Lancet in 2017 and other published studies, supporting the validity of our findings.
Conclusion:
With the ODACoRH algorithm, we demonstrate the capability of effectively integrating data from multiple sites in a decentralized data setting while accounting for between-site heterogeneity. Importantly, our study reveals several crucial clinical risk factors for PCD that merit further investigations.
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