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Updated: Jul 5, 2025

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
NSD3 in Cancer: Unraveling Methyltransferase-Dependent and Isoform-Specific Functions
Yanara Nuñez1,2, Sebastian Vera1, Victor Baeza1
1Biomedical Science Research Laboratory, Department of Basic Sciences, Faculty of Medicine, Universidad Católica de la Santísima Concepción, Concepción 4090541, Chile.
Abstract:
NSD3 (nuclear receptor-binding SET domain protein 3) is a member of the NSD histone methyltransferase family of proteins. In recent years, it has been identified as a potential oncogene in certain types of cancer. The NSD3 gene encodes three isoforms, the long version (NSD3L), a short version (NSD3S) and the WHISTLE isoforms. Importantly, the NSD3S isoform corresponds to the N-terminal region of the full-length protein, lacking the methyltransferase domain. The chromosomal location of NSD3 is frequently amplified across cancer types, such as breast, lung, and colon, among others. Recently, this amplification has been correlated to a chromothripsis event, that could explain the different NSD3 alterations found in cancer. The fusion proteins containing NSD3 have also been reported in leukemia (NSD3-NUP98), and in NUT (nuclear protein of the testis) midline carcinoma (NSD3-NUT). Its role as an oncogene has been described by modulating different cancer pathways through its methyltransferase activity, or the short isoform of the protein, through protein interactions. Specifically, in this review we will focus on the functions that have been characterized as methyltransferase dependent, and those that have been correlated with the expression of the NSD3S isoform. There is evidence that both the NSD3L and NSD3S isoforms are relevant for cancer progression, establishing NSD3 as a therapeutic target. However, further functional studies are needed to differentiate NSD3 oncogenic activity as dependent or independent of the catalytic domain of the protein, as well as the contribution of each isoform and its clinical significance in cancer progression.
Insights
Nuclear receptor-binding SET domain protein 3 (NSD3) is implicated in cancer progression. Both its methyltransferase-dependent and short isoform functions highlight NSD3 as a potential therapeutic target for various cancers.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Nuclear receptor-binding SET domain protein 3 (NSD3) is a histone methyltransferase family member.
- NSD3 is increasingly recognized as a potential oncogene across multiple cancer types.
- The NSD3 gene produces multiple isoforms, including NSD3L and NSD3S, with NSD3S lacking the methyltransferase domain.
Purpose of the Study:
- To review the methyltransferase-dependent functions of NSD3.
- To explore functions associated with the NSD3S isoform.
- To establish NSD3 as a therapeutic target in cancer progression.
Main Methods:
- Literature review focusing on NSD3 functions.
- Analysis of NSD3 gene amplification and alterations in cancer.
- Examination of NSD3 fusion proteins in leukemia and carcinoma.
Main Results:
- NSD3 amplification is common in breast, lung, and colon cancers, linked to chromothripsis.
- NSD3 oncogenic activity involves methyltransferase-dependent pathways and protein interactions via NSD3S.
- Both NSD3L and NSD3S isoforms are implicated in cancer progression.
Conclusions:
- NSD3 plays a significant role in cancer progression through its isoforms and activities.
- Further research is needed to distinguish NSD3's oncogenic roles and clinical significance.
- NSD3 represents a promising therapeutic target for cancer treatment.
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