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Updated: Jul 3, 2025

Study of the DNA Damage Checkpoint using Xenopus Egg Extracts
Published on: November 5, 2012
Resection of DNA double-strand breaks activates Mre11-Rad50-Nbs1- and Rad9-Hus1-Rad1-dependent mechanisms that
Kensuke Tatsukawa1, Reihi Sakamoto1, Yoshitaka Kawasoe2
1Graduate School of Systems Life Sciences, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan.
Abstract:
Sensing and processing of DNA double-strand breaks (DSBs) are vital to genome stability. DSBs are primarily detected by the ATM checkpoint pathway, where the Mre11-Rad50-Nbs1 (MRN) complex serves as the DSB sensor. Subsequent DSB end resection activates the ATR checkpoint pathway, where replication protein A, MRN, and the Rad9-Hus1-Rad1 (9-1-1) clamp serve as the DNA structure sensors. ATR activation depends also on Topbp1, which is loaded onto DNA through multiple mechanisms. While different DNA structures elicit specific ATR-activation subpathways, the regulation and mechanisms of the ATR-activation subpathways are not fully understood. Using DNA substrates that mimic extensively resected DSBs, we show here that MRN and 9-1-1 redundantly stimulate Dna2-dependent long-range end resection and ATR activation in Xenopus egg extracts. MRN serves as the loading platform for ATM, which, in turn, stimulates Dna2- and Topbp1-loading. Nevertheless, MRN promotes Dna2-mediated end processing largely independently of ATM. 9-1-1 is dispensable for bulk Dna2 loading, and Topbp1 loading is interdependent with 9-1-1. ATR facilitates Mre11 phosphorylation and ATM dissociation. These data uncover that long-range end resection activates two redundant pathways that facilitate ATR checkpoint signaling and DNA processing in a vertebrate system.
Insights
The Mre11-Rad50-Nbs1 (MRN) complex and the 9-1-1 clamp redundantly promote DNA end resection and ATR activation. This reveals two parallel pathways for DNA repair signaling in vertebrates.
Area of Science:
- Molecular Biology
- Genetics
- Cellular Biology
Background:
- DNA double-strand breaks (DSBs) are critical DNA lesions that threaten genome stability.
- The ATM and ATR checkpoint pathways are essential for sensing and responding to DSBs.
- The Mre11-Rad50-Nbs1 (MRN) complex and the Rad9-Hus1-Rad1 (9-1-1) clamp are key DNA structure sensors.
Purpose of the Study:
- To investigate the mechanisms regulating ATR activation and DNA end resection in response to DSBs.
- To elucidate the roles of MRN, 9-1-1, and Topbp1 in ATR signaling pathways.
- To understand how different DNA structures trigger specific ATR activation subpathways.
Main Methods:
- Utilized DNA substrates mimicking extensively resected DSBs in Xenopus egg extracts.
- Investigated the roles of MRN, 9-1-1, Dna2, Topbp1, ATM, and ATR in DNA processing.
- Analyzed protein loading, phosphorylation, and dissociation events during checkpoint activation.
Main Results:
- MRN and 9-1-1 redundantly stimulate Dna2-dependent long-range end resection and ATR activation.
- MRN acts as a platform for ATM, promoting Dna2 and Topbp1 loading, but MRN-mediated processing is largely ATM-independent.
- Topbp1 loading is interdependent with 9-1-1, and ATR activation leads to Mre11 phosphorylation and ATM dissociation.
Conclusions:
- Long-range end resection activates two redundant pathways that enhance ATR checkpoint signaling and DNA processing.
- This study uncovers a complex interplay between MRN, 9-1-1, ATM, and ATR in vertebrate DNA repair.
- The findings provide new insights into the regulation of DNA double-strand break repair pathways.
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