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Pan-Cancer Analysis Reveals Disulfidoptosis-Associated Genes as Promising Immunotherapeutic Targets: Insights Gained
Borui Xu1, Minghao Li2, Nuoqing Weng3
1Department of Pancreato-Biliary Surgery, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou 510080, China.
Abstract:
Disulfidoptosis, a novel form of cell death, is distinct from other well-known cell death mechanisms. Consequently, a profound investigation into disulfidoptosis elucidates the fundamental mechanisms underlying tumorigenesis, presenting promising avenues for therapeutic intervention. Comprehensive analysis of disulfidoptosis-associated gene (DRG) expression in pan cancer utilized TCGA, GEO, and ICGC datasets, including survival and Cox-regression analyses for prognostic evaluation. We analyzed the association between DRG expression and both immune cell infiltration and immune-related gene expression using the ESTIMATE and TISDIB datasets. We obtained our single-cell RNA sequencing (scRNA-seq) data from the GEO repository. Subsequently, we assessed disulfidoptosis activity in various cell types. Evaluation of immune cell infiltration and biological functions was analyzed via single-sample gene set enrichment (ssGSEA) and gene set variation analysis (GSVA). For in vitro validation experiments, the results from real-time PCR (RT-qPCR) and Western blot were used to explore the expression of SLC7A11 in hepatocellular carcinoma (HCC) tissues and different cancer cell lines, while siRNA-mediated SLC7A11 knockdown effects on HCC cell proliferation and migration were examined. Expression levels of DRGs, especially SLC7A11, were significantly elevated in tumor samples compared to normal samples, which was associated with poorer outcomes. Except for SLC7A11, DRGs consistently exhibited high CNV and SNV rates, particularly in HCC. In various tumors, DRGs were negatively associated with DNA promoter methylation. TME analyses further illustrated a negative correlation of DRG expression with ImmuneScore and StromalScore and a positive correlation with tumor purity. Our analysis unveiled diverse cellular subgroups within HCC, particularly focusing on Treg cell populations, providing insights into the intricate interplay of immune activation and suppression within the tumor microenvironment (TME). These findings were further validated through RT-qPCR, Western blot analyses, and immunohistochemical analyses. Additionally, the knockdown of SLC7A11 induced a suppression of proliferation and migration in HCC cell lines. In conclusion, our comprehensive pan-cancer analysis research has demonstrated the significant prognostic and immunological role of disulfidoptosis across a spectrum of tumors, notably HCC, and identified SLC7A11 as a promising therapeutic target.
Insights
Disulfidoptosis, a novel cell death, impacts cancer. Disulfidoptosis-associated genes (DRGs), especially SLC7A11, are linked to poor prognosis and can be targeted for cancer therapy.
Area of Science:
- Oncology
- Cell Death Mechanisms
- Cancer Genomics
Background:
- Disulfidoptosis is a newly identified cell death pathway.
- Understanding disulfidoptosis is crucial for cancer research and therapy development.
Purpose of the Study:
- To investigate the role of disulfidoptosis-associated genes (DRGs) in pan-cancer prognosis and the tumor microenvironment (TME).
- To identify potential therapeutic targets, focusing on SLC7A11 in hepatocellular carcinoma (HCC).
Main Methods:
- Pan-cancer analysis of TCGA, GEO, and ICGC datasets for DRG expression, survival, and Cox-regression.
- Analysis of immune cell infiltration and gene expression using ESTIMATE and TISDIB datasets.
- scRNA-seq, ssGSEA, GSVA, RT-qPCR, Western blot, and siRNA assays for in vitro validation, particularly for SLC7A11 in HCC.
Main Results:
- DRG expression, notably SLC7A11, was elevated in tumors, correlating with poorer outcomes.
- DRGs showed high CNV/SNV rates, negative association with promoter methylation, and altered TME composition.
- SLC7A11 knockdown suppressed HCC cell proliferation and migration, validating its role.
Conclusions:
- Disulfidoptosis plays a significant prognostic and immunological role across various cancers, including HCC.
- DRGs, particularly SLC7A11, are promising therapeutic targets for cancer treatment.
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