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Updated: Jul 2, 2025

Site Specific Lysine Acetylation of Histones for Nucleosome Reconstitution using Genetic Code Expansion in Escherichia coli
Published on: December 26, 2020
Processivity and specificity of histone acetylation by the male-specific lethal complex
Anna E Kiss1, Anuroop V Venkatasubramani1, Dilan Pathirana2
1Biomedical Center, Molecular Biology Division, Ludwig-Maximilians-University of Munich, Planegg-Martinsried, Germany.
Abstract:
Acetylation of lysine 16 of histone H4 (H4K16ac) stands out among the histone modifications, because it decompacts the chromatin fiber. The metazoan acetyltransferase MOF (KAT8) regulates transcription through H4K16 acetylation. Antibody-based studies had yielded inconclusive results about the selectivity of MOF to acetylate the H4 N-terminus. We used targeted mass spectrometry to examine the activity of MOF in the male-specific lethal core (4-MSL) complex on nucleosome array substrates. This complex is part of the Dosage Compensation Complex (DCC) that activates X-chromosomal genes in male Drosophila. During short reaction times, MOF acetylated H4K16 efficiently and with excellent selectivity. Upon longer incubation, the enzyme progressively acetylated lysines 12, 8 and 5, leading to a mixture of oligo-acetylated H4. Mathematical modeling suggests that MOF recognizes and acetylates H4K16 with high selectivity, but remains substrate-bound and continues to acetylate more N-terminal H4 lysines in a processive manner. The 4-MSL complex lacks non-coding roX RNA, a critical component of the DCC. Remarkably, addition of RNA to the reaction non-specifically suppressed H4 oligo-acetylation in favor of specific H4K16 acetylation. Because RNA destabilizes the MSL-nucleosome interaction in vitro we speculate that RNA accelerates enzyme-substrate turn-over in vivo, thus limiting the processivity of MOF, thereby increasing specific H4K16 acetylation.
Insights
Histone acetyltransferase MOF (KAT8) initially acetylates H4K16 selectively. Further acetylation occurs processively, but RNA addition favors specific H4K16 acetylation by limiting MOF enzyme activity.
Area of Science:
- Epigenetics and Molecular Biology
- Chromatin Dynamics
- Gene Regulation
Background:
- Histone acetylation, particularly H4K16ac, is crucial for chromatin decondensation and transcriptional regulation.
- The MOF (KAT8) enzyme, a metazoan acetyltransferase, plays a key role in H4K16 acetylation.
- Previous antibody-based studies provided inconclusive data on MOF's substrate selectivity.
Purpose of the Study:
- To investigate the substrate selectivity of the MOF enzyme within the 4-MSL complex.
- To elucidate the mechanism of H4 N-terminus acetylation by MOF.
- To understand the role of RNA in modulating MOF activity and H4 acetylation patterns.
Main Methods:
- Utilized targeted mass spectrometry to analyze MOF activity on nucleosome array substrates.
- Employed mathematical modeling to interpret enzyme kinetics and acetylation patterns.
- Investigated the effect of RNA on MOF activity in vitro.
Main Results:
- MOF demonstrated high selectivity for H4K16 acetylation under short reaction times.
- Extended incubation led to processive acetylation of additional H4 lysines (H4K12, H4K8, H4K5).
- RNA addition suppressed non-specific H4 oligo-acetylation, promoting selective H4K16 acetylation.
Conclusions:
- MOF exhibits initial high selectivity for H4K16 but can exhibit processive acetylation of other lysines.
- RNA appears to enhance MOF's substrate turnover in vivo, limiting processivity and increasing H4K16 specificity.
- This finding provides insights into the regulation of gene expression through precise histone modification patterns.
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