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Outer-Boundary Assisted Segmentation and Quantification of Trabecular Bones by an Imagej Plugin
Published on: March 14, 2018
Deep learning-based harmonization of trabecular bone microstructures between high- and low-resolution CT imaging
Indranil Guha1, Syed Ahmed Nadeem2, Xiaoliu Zhang1
1Department of Electrical and Computer Engineering, College of Engineering, University of Iowa, Iowa City, Iowa, USA.
A new deep learning method harmonizes low- and high-resolution CT scans for osteoporosis research. The 3DGAN-CIRCLE model improves bone microstructural analysis, enhancing accuracy in multi-site studies.
Area of Science:
- Medical Imaging
- Biomedical Engineering
- Osteoporosis Research
Background:
- Osteoporosis diagnosis relies on bone mineral density and microstructure.
- Clinical CT enables in vivo bone microstructural imaging.
- Variations in CT scanner resolution necessitate image harmonization for consistent metrics.
Purpose of the Study:
- To develop and evaluate a deep learning (DL) method for harmonizing bone microstructural images from low- and high-resolution CT scanners.
- To assess the method's performance on image data and derived microstructural metrics.
Main Methods:
- A 3D version of GAN-CIRCLE, utilizing two generative adversarial networks (GANs), was developed for CT image resolution harmonization.
- The model learned to map low-resolution CT (LRCT) to high-resolution CT (HRCT) and vice versa.
- Supervised and unsupervised training/evaluation were performed on LRCT and HRCT image blocks from 20 volunteers.
Main Results:
- Supervised and unsupervised 3DGAN-CIRCLE methods significantly improved structural similarity (SSIM) compared to LRCT.
- Supervised 3DGAN-CIRCLE demonstrated higher agreement (CCC) for trabecular (Tb) measures compared to LRCT and unsupervised methods.
- The supervised method reduced bias and variability in Tb measures, outperforming existing DL methods.
Conclusions:
- 3DGAN-CIRCLE effectively generates HRCT images with high structural similarity to true HRCT.
- Supervised 3DGAN-CIRCLE enhances the accuracy of microstructural measures and outperforms unsupervised approaches.
- This DL solution aids in harmonizing multi-site imaging data for longitudinal osteoporosis studies.
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