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Updated: Jul 27, 2026

Quantifying Microglia Morphology from Photomicrographs of Immunohistochemistry Prepared Tissue Using ImageJ
Published on: June 5, 2018
Quantifying microglial morphology: an insight into function
Tabitha R F Green1, Rachel K Rowe1
1Department of Integrative Physiology, The University of Colorado Boulder, Boulder, CO, USA.
Microglia morphology changes with CNS injury but doesn't always equate to function. Combining histological and genetic methods offers a comprehensive view of microglial reactive status for research.
Area of Science:
- Neuroscience
- Immunology
- Cell Biology
Background:
- Microglia are the primary immune cells of the central nervous system (CNS).
- Microglial morphology is highly plastic, rapidly altering in response to CNS injury or infection.
- Morphological changes in microglia serve as key indicators of inflammation and tissue damage severity.
Purpose of the Study:
- To review the relationship between microglial morphology and function.
- To emphasize that while morphology is not synonymous with function, it can inform functional inferences.
- To highlight the necessity of integrating histological and genetic approaches for a complete understanding of microglial reactive states.
Main Methods:
- Review of existing literature on microglial morphology and function.
- Discussion of qualitative and quantitative morphological assessment techniques.
- Emphasis on immunohistochemistry as a valuable analytical tool.
Main Results:
- Diverse microglial morphologies associated with damage have been documented.
- The precise functions of distinct microglial morphologies remain incompletely understood.
- Morphological analysis, while informative, requires complementary methods for full functional interpretation.
Conclusions:
- Microglial morphology is a critical but not definitive marker of microglial state.
- Combining histological and genetic analyses provides a more robust understanding of microglial responses.
- High-quality immunohistochemistry remains essential for addressing many research questions regarding microglia.
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