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Related Concept Videos

Improving Translational Accuracy02:07

Improving Translational Accuracy

Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
Improving Translational Accuracy02:07

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Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...

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Developing a machine learning model for accurate nucleoside hydrogels prediction based on descriptors.

Weiqi Li1, Yinghui Wen1, Kaichao Wang1

  • 1State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, Research Unit of Oral Carcinogenesis and Management, Chinese Academy of Medical Sciences, West China Hospital of Stomatology, Sichuan University, Chengdu, Sichuan, 610041, PR China.

Nature Communications
|March 24, 2024
PubMed
Summary
This summary is machine-generated.

Scientists developed a machine learning model to predict hydrogel formation in nucleoside derivatives. This tool aids in discovering novel hydrogels with potential biomedical and sensing applications.

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Area of Science:

  • Biomaterials Science
  • Supramolecular Chemistry
  • Computational Chemistry

Background:

  • Nucleoside-derived supramolecular hydrogels show promise in biomedicine due to biocompatibility.
  • Predicting hydrogel formation from nucleoside derivatives remains a significant challenge.
  • Lack of predictive models hinders the discovery of new hydrogel materials.

Purpose of the Study:

  • To develop a machine learning model for predicting the hydrogel-forming ability of nucleoside derivatives.
  • To identify novel nucleoside derivatives with hydrogelation capabilities.
  • To explore potential applications of newly discovered hydrogels.

Main Methods:

  • Machine learning model development using a dataset of 71 nucleoside derivatives.
  • Model optimization and validation to achieve 71% accuracy.
  • Experimental verification of hydrogel formation for selected molecules.

Main Results:

  • An accurate machine learning model (71% accuracy) was established for predicting hydrogel formation.
  • 24 nucleoside derivatives were computationally screened, and their hydrogel-forming ability was experimentally confirmed.
  • Two novel cation-independent nucleoside hydrogels were discovered and characterized.
  • The cation-independent hydrogels demonstrated potential for detecting Ag+ and cysteine.

Conclusions:

  • Machine learning provides a valuable tool for predicting nucleoside derivative hydrogelation.
  • The discovered cation-independent hydrogels offer new possibilities for sensing applications.
  • This approach accelerates the discovery and development of functional supramolecular hydrogels.