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Massive Parallel DNA Sequencing of Patients with Inherited Cardiomyopathies in Cyprus and Suggestion of Digenic or
Constantina Koutsofti1, Marios Ioannides2, Christiana Polydorou1
1Molecular Medicine Research Center, biobank.cy Center of Excellence in Biobanking and Biomedical Research, University of Cyprus, Nicosia 2109, Cyprus.
Insights
Genetic analysis of inherited cardiomyopathies in 25 families revealed 41 variants in 26 genes. This study establishes a genetic baseline for precision cardiology in Cyprus, aiding diagnosis of these complex heart conditions.
Area of Science:
- Cardiovascular Genetics
- Molecular Cardiology
- Genomic Medicine
Background:
- Inherited cardiomyopathies are a diverse group of genetic heart diseases.
- These conditions can lead to severe outcomes like heart failure and sudden cardiac death.
- Genetic variants in cardiomyocyte genes are primary causes.
Purpose of the Study:
- To investigate the genetic basis of inherited cardiomyopathies in Cyprus.
- To identify DNA variants associated with cardiac phenotypes in affected families.
- To establish a genetic baseline for precision cardiology in the region.
Main Methods:
- Massive parallel DNA sequencing using a 72-gene panel.
- Computational prediction, database analysis, and in-house filtering for variant pathogenicity.
- Sanger sequencing for variant validation and familial segregation testing.
Main Results:
- Identified 41 distinct variants across 26 genes in 25 families.
- Fifteen variants were previously reported (12 disease-causing, 3 probable disease-causing).
- Twenty-six novel variants were discovered; classified as 28% VUS, 19.5% likely pathogenic, and 12.2% pathogenic.
Conclusions:
- Genetic heterogeneity and multiple variants complicate molecular diagnosis of cardiomyopathies.
- This study provides the first systematic genetic characterization of inherited cardiac conditions in Cyprus.
- Findings support the development of genetic diagnostics and precision cardiology approaches.
Abstract:
Inherited cardiomyopathies represent a highly heterogeneous group of cardiac diseases. DNA variants in genes expressed in cardiomyocytes cause a diverse spectrum of cardiomyopathies, ultimately leading to heart failure, arrythmias, and sudden cardiac death. We applied massive parallel DNA sequencing using a 72-gene panel for studying inherited cardiomyopathies. We report on variants in 25 families, where pathogenicity was predicted by different computational approaches, databases, and an in-house filtering analysis. All variants were validated using Sanger sequencing. Familial segregation was tested when possible. We identified 41 different variants in 26 genes. Analytically, we identified fifteen variants previously reported in the Human Gene Mutation Database: twelve mentioned as disease-causing mutations (DM) and three as probable disease-causing mutations (DM?). Additionally, we identified 26 novel variants. We classified the forty-one variants as follows: twenty-eight (68.3%) as variants of uncertain significance, eight (19.5%) as likely pathogenic, and five (12.2%) as pathogenic. We genetically characterized families with a cardiac phenotype. The genetic heterogeneity and the multiplicity of candidate variants are making a definite molecular diagnosis challenging, especially when there is a suspicion of incomplete penetrance or digenic-oligogenic inheritance. This is the first systematic study of inherited cardiac conditions in Cyprus, enabling us to develop a genetic baseline and precision cardiology.
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