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Updated: Jun 28, 2025

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Cryo-EM and Single-Particle Analysis with Scipion
Published on: May 29, 2021
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From solution to structure: empowering inclusive cryo-EM with a pre-characterization pipeline for biological samples
Christoph Mueller-Dieckmann1, Alessandro Grinzato1, Grégory Effantin2
1Structural Biology, European Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, Grenoble 38000, France.
Summary
The cryo-electron microscopy (cryo-EM) Solution-to-Structure (SOS) pipeline provides comprehensive services for researchers without access to advanced cryo-EM infrastructure. This pipeline democratizes structural biology research by offering end-to-end support from sample preparation to high-resolution data collection.
Area of Science:
- Structural Biology
- Biophysics
- Microscopy
Background:
- Limited access to cryo-electron microscopy (cryo-EM) infrastructure hinders research in many academic institutions.
- There is a need for accessible, high-throughput cryo-EM services for structural determination.
Purpose of the Study:
- To introduce the cryo-EM Solution-to-Structure (SOS) pipeline.
- To provide a comprehensive service for researchers lacking in-house cryo-EM facilities.
- To enable high-resolution structural analysis through single-particle analysis and cryo-electron tomography.
Main Methods:
- The SOS pipeline includes grid preparation, negative stain imaging (for protein samples), grid screening, and preliminary data collection.
- It offers two entry points: submission of purified protein samples or already vitrified grids.
- High-resolution data collection is performed on a Titan Krios microscope with a direct electron detector and energy filter.
Main Results:
- The pipeline successfully integrates sample preparation, screening, and high-resolution data collection.
- It accommodates both single-particle analysis and cryo-electron tomography workflows.
- Successful completion of screening steps leads to high-resolution data acquisition.
Conclusions:
- The SOS pipeline effectively democratizes access to cutting-edge cryo-EM technology.
- It offers a robust solution for researchers to achieve high-resolution structures.
- The pipeline streamlines the process from sample to structure, enhancing research capabilities.

