Related Experiment Video
Updated: May 6, 2026

06:29
Workflow and Tools for Crystallographic Fragment Screening at the Helmholtz-Zentrum Berlin
Published on: March 3, 2021
5.5K
HEIDI: an experiment-management platform enabling high-throughput fragment and compound screening.
A Metz1, D P Stegmann1, E H Panepucci1
1Swiss Light Source, Paul Scherrer Institute, 5232 Villigen PSI, Switzerland.
Acta Crystallographica. Section D, Structural Biology
|April 12, 2024
Summary
The Swiss Light Source upgraded its fragment-based drug discovery software (FFCS) with a new HEIDI webpage for rotational data experiments and cloud data management. This enhances user experience and data accessibility for drug discovery research.
Area of Science:
- Structural biology
- Biophysics
- Computational chemistry
Background:
- The Swiss Light Source (SLS) supports fragment-based drug discovery (FBDD) using the Fast Fragment and Compound Screening (FFCS) software.
- Automated data collection is available via Smart Digital User (SDU) software at PXI, PXII, and PXIII beamlines.
Purpose of the Study:
- Introduce the HEIDI webpage for managing rotational data experiments in FBDD.
- Detail the migration of the FFCS MongoDB instance to a cloud-based platform.
- Enhance data accessibility, security, and user experience for SLS users.
Main Methods:
- Developed the HEIDI webpage with modern web technologies and a REST API.
- Migrated the FFCS local MongoDB database to a secure, encrypted cloud environment.
- Integrated HEIDI with existing SLS software infrastructure for seamless operation.
Main Results:
- The HEIDI webpage provides a user-friendly interface for sample management and data review.
- Cloud migration ensures secure, encrypted, and consistently accessible FFCS data via a robust REST API.
- Programmatic access to data is enabled through the HEIDI REST API, facilitating automated workflows.
Conclusions:
- The HEIDI webpage and cloud-based FFCS data management significantly improve the FBDD workflow at SLS.
- These advancements enhance user experience, data security, and system reliability.
- The new platform supports future system expansions and capabilities in drug discovery research.
Related Concept Videos
Patch Clamp
6.0K
Many fundamental cell functions such as muscle contraction and nerve transmission rely on the electrical signals produced by the movement of positively and negatively charged ions across the cell membrane. One competent method to record current flowing across the whole cell or single ion channel is the patch-clamp technique.
In this method, a glass micropipette containing electrolyte solution is tightly sealed against a small portion of the cell membrane. As a result, a patch of the cell...
In this method, a glass micropipette containing electrolyte solution is tightly sealed against a small portion of the cell membrane. As a result, a patch of the cell...
6.0K
Drug Discovery: Overview
10.4K
Drug discovery is a multifaceted process involving extensive screening, testing, and optimization of lead compounds to identify potential new drugs for therapeutic use. It combines several approaches, including screening large numbers of natural products, chemical modification of known active molecules, identification of new drug targets, and rational design based on biological mechanisms and drug-receptor structure. These approaches are carried out in both academic research laboratories and...
10.4K

