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Updated: Jun 28, 2025

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Metabolic Profile Analysis of Zebrafish Embryos
Published on: January 14, 2013
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Metabolomic changes following GenX and PFBS exposure in developing zebrafish
Fiona Dunn1, Shannon E Paquette2, Kurt D Pennell1
1School of Engineering, Brown University, 184 Hope Street, Providence, RI, 02912, United States.
Aquatic Toxicology (Amsterdam, Netherlands)
|April 12, 2024
Summary
Short-chain per- and polyfluoroalkyl substances (PFAS), such as GenX and PFBS, disrupt zebrafish metabolism. PFBS showed higher absorption and greater impact on metabolic pathways, including amino acid and lipid metabolism, suggesting risks for growth and development.
Area of Science:
- Environmental toxicology
- Metabolomics
- Zebrafish models
Background:
- Short-chain per- and polyfluoroalkyl substances (PFAS), including GenX and PFBS, are replacements for persistent long-chain PFAS.
- These emerging contaminants are found globally in water sources.
- Limited data exists on their metabolic effects and toxicity from early-life exposure.
Purpose of the Study:
- To investigate the toxicity and metabolic alterations caused by early-life exposure to GenX and PFBS in larval zebrafish.
- To quantify the uptake of GenX and PFBS in zebrafish larvae.
- To identify specific metabolic pathways affected by these short-chain PFAS.
Main Methods:
- Larval zebrafish were exposed to 150 µM GenX or 95.0 µM PFBS from 4 hours post-fertilization to 6 days post-fertilization.
- Uptake of chemicals was quantified using ultra-high-performance liquid chromatography and high-resolution mass spectrometry.
- Targeted and untargeted metabolomics analyses were performed to assess metabolic changes.
Main Results:
- PFBS uptake was 20.4% higher than GenX in zebrafish larvae.
- PFBS exposure altered 13 targeted metabolites and 21 metabolic pathways; GenX altered 1 metabolite and 17 pathways.
- Both chemicals significantly impacted amino acid metabolism, with PFBS also affecting carbohydrate, lipid, and xenobiotic metabolism.
Conclusions:
- GenX and PFBS exposure significantly alters the zebrafish metabolome.
- Significant dysregulation observed in metabolic pathways crucial for growth and development.
- Findings highlight potential risks associated with early-life exposure to these short-chain PFAS replacements.

