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Automated Structure Discovery for Scanning Tunneling Microscopy.

Lauri Kurki1, Niko Oinonen1,2, Adam S Foster1,3

  • 1Department of Applied Physics, Aalto University, Aalto, Espoo 00076, Finland.

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|April 22, 2024
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Summary
This summary is machine-generated.

Automated structure discovery for Scanning Tunneling Microscopy (STM) uses machine learning to predict atomic structures from images. This tool aids in identifying organic molecules, expanding STM applications beyond noncontact atomic force microscopy (nc-AFM).

Keywords:
convolutional neural networkmachine learningscanning probe microscopyscanning tunneling microscopystructure discoverytip functionalization

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Area of Science:

  • Surface Science
  • Materials Science
  • Computational Chemistry

Background:

  • Scanning Tunneling Microscopy (STM) provides simultaneous geometric and electronic structure information.
  • Interpreting STM signals is challenging, limiting studies to simple, planar samples.
  • Existing methods for structure discovery are primarily developed for noncontact atomic force microscopy (nc-AFM).

Purpose of the Study:

  • To introduce a machine learning tool for automated atomic structure prediction directly from STM images.
  • To adapt and apply successful nc-AFM structure discovery methods to STM data.
  • To enable direct atomic structure determination for a wider range of samples using STM.

Main Methods:

  • Development of automated structure discovery for STM (ASD-STM) using machine learning.
  • Leveraging established structure discovery techniques from nc-AFM research.
  • Application and validation of the ASD-STM tool on experimental STM images of organic molecules.

Main Results:

  • Achieved good accuracy in predicting atomic structures from STM images.
  • Demonstrated qualitative success in chemical identification of organic molecules.
  • Highlighted areas for future development to enhance ASD-STM capabilities.

Conclusions:

  • ASD-STM facilitates direct atomic structure discovery from STM images, broadening its applicability.
  • The method makes advanced structure analysis accessible to a wider scanning probe microscopy community.
  • This work paves the way for developing more sophisticated machine learning approaches for STM data analysis.