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Updated: Jun 27, 2025

X-Ray Crystallography to Study the Oligomeric State Transition of the Thermotoga maritima M42 Aminopeptidase TmPep1050
Published on: May 13, 2020
Calcium-induced structural transitions are central to the folding, function, and processing of serratiopeptidase
Vishal Srivastava1, Sheetal Bandhu1, Shivam Mishra1
1Kusuma School of Biological Sciences, Indian Institute of Technology Delhi, India.
Abstract:
Serratia marcescens is an emerging health-threatening, gram-negative opportunistic pathogen associated with a wide variety of localized and life-threatening systemic infections. One of the most crucial virulence factors produced by S. marcescens is serratiopeptidase, a 50.2-kDa repeats-in-toxin (RTX) family broad-specificity zinc metalloprotease. RTX family proteins are functionally diverse exoproteins of gram-negative bacteria that exhibit calcium-dependent structural dynamicity and are secreted through a common type-1 secretion system (T1SS) machinery. To evaluate the impact of various divalent ligands on the folding and maturation of serratiopeptidase zymogen, the protein was purified and a series of structural and functional investigations were undertaken. The results indicate that calcium binding to the C-terminal RTX domain acts as a folding switch, triggering a disordered-to-ordered transition in the enzyme's conformation. Further, the auto-processing of the 16-amino acid N-terminal pro-peptide results in the maturation of the enzyme. The binding of calcium ions to serratiopeptidase causes a highly cooperative conformational transition in its structure, which is essential for the enzyme's activation and maturation. This conformational change is accompanied by an increase in solubility and enzymatic activity. For efficient secretion and to minimize intracellular toxicity, the enzyme needs to be in an unfolded extended form. The calcium-rich extracellular environment favors the folding and processing of zymogen into mature serratiopeptidase, i.e., the holo-form required by S. marcescens to establish infections and survive in different environmental niches.
Insights
Calcium binding to serratiopeptidase, a virulence factor from Serratia marcescens, triggers its folding and activation. This process is crucial for the opportunistic pathogen
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Serratia marcescens is an opportunistic pathogen causing diverse infections.
- Serratiopeptidase, a zinc metalloprotease, is a key virulence factor.
- Repeats-in-toxin (RTX) proteins are secreted exoproteins with calcium-dependent functions.
Purpose of the Study:
- To investigate the role of divalent ligands in serratiopeptidase zymogen folding and maturation.
- To understand the structural and functional impact of calcium on serratiopeptidase.
Main Methods:
- Purification of serratiopeptidase.
- Structural and functional investigations.
- Analysis of protein folding and auto-processing.
Main Results:
- Calcium binding to the RTX domain induces a disordered-to-ordered conformational transition.
- Auto-processing of the N-terminal pro-peptide matures the enzyme.
- Calcium binding enhances solubility and enzymatic activity, crucial for activation.
Conclusions:
- Calcium acts as a folding switch for serratiopeptidase maturation.
- The extracellular calcium-rich environment facilitates the conversion to the active holo-form.
- Mature serratiopeptidase is essential for S. marcescens infection and survival.
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